Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXN3O00409 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
FOXN3O00409 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC18.64■□□□□ 0.57
FOXN3O00409 NKTR-203ENST00000442970 646 ntTSL 2 BASIC18.64■□□□□ 0.57
FOXN3O00409 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC18.64■□□□□ 0.57
FOXN3O00409 NT5C2-211ENST00000470299 249 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC18.64■□□□□ 0.57
FOXN3O00409 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC18.64■□□□□ 0.57
FOXN3O00409 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.64■□□□□ 0.57
FOXN3O00409 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC18.64■□□□□ 0.57
FOXN3O00409 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.64■□□□□ 0.57
FOXN3O00409 AC114341.1-201ENST00000618070 349 ntBASIC18.64■□□□□ 0.57
FOXN3O00409 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
FOXN3O00409 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
FOXN3O00409 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
FOXN3O00409 AL121761.2-201ENST00000598007 1648 ntBASIC18.63■□□□□ 0.57
FOXN3O00409 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 WIPI2-201ENST00000288828 4476 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 B4GALT4-216ENST00000483209 2494 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 FUOM-202ENST00000368551 628 ntTSL 3 BASIC18.63■□□□□ 0.57
FOXN3O00409 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
FOXN3O00409 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXN3O00409 MIR5100-201ENST00000579544 119 ntBASIC18.63■□□□□ 0.57
FOXN3O00409 AC138207.7-201ENST00000584499 668 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 AC099336.1-202ENST00000602961 463 ntBASIC18.63■□□□□ 0.57
FOXN3O00409 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 CCNC-219ENST00000627680 896 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC18.63■□□□□ 0.57
FOXN3O00409 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 NKILA-202ENST00000614771 2598 ntBASIC18.63■□□□□ 0.57
FOXN3O00409 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC18.63■□□□□ 0.57
FOXN3O00409 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
FOXN3O00409 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
FOXN3O00409 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 LINC01569-202ENST00000573042 2093 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 ATXN7-210ENST00000487717 3683 ntAPPRIS P3 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 TMEM171-201ENST00000287773 1247 ntAPPRIS ALT1 TSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 AC003669.1-201ENST00000334569 611 ntBASIC18.62■□□□□ 0.57
FOXN3O00409 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
FOXN3O00409 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC18.62■□□□□ 0.57
FOXN3O00409 AL096828.1-201ENST00000423020 542 ntTSL 4 BASIC18.62■□□□□ 0.57
FOXN3O00409 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.62■□□□□ 0.57
FOXN3O00409 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC18.62■□□□□ 0.57
FOXN3O00409 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
FOXN3O00409 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 44.6 ms