Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 SPDYE5-203ENST00000625065 1700 ntAPPRIS P2 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 C21orf91-202ENST00000400558 1090 ntTSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 AL355075.4-201ENST00000554988 638 ntBASIC15.07■□□□□ 0
CHMP1AQ9HD42 MTHFS-202ENST00000559722 948 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 GPX4-207ENST00000589115 812 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 TMC5-202ENST00000381414 4755 ntTSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 WNT5B-203ENST00000537031 1437 ntAPPRIS P1 TSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 CICP6-201ENST00000457191 2729 ntBASIC15.07■□□□□ 0
CHMP1AQ9HD42 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
CHMP1AQ9HD42 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 NACAD-202ENST00000490531 4780 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
CHMP1AQ9HD42 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 SLC22A7-201ENST00000372574 1822 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 WIPF2-210ENST00000585043 2693 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 TCTEX1D1-201ENST00000282670 2001 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 TCTEX1D2-201ENST00000325318 673 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 Telomerase-vert.1-201ENST00000363312 438 ntBASIC15.06■□□□□ 0
CHMP1AQ9HD42 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 MIR3936HG-202ENST00000457998 733 ntTSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 RENBP-202ENST00000393700 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 METTL5-207ENST00000410097 1370 ntTSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 PCDHB19P-201ENST00000570871 2371 ntBASIC15.06■□□□□ 0
CHMP1AQ9HD42 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC15.06■□□□□ 0
CHMP1AQ9HD42 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
CHMP1AQ9HD42 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC15.05■□□□□ 0
CHMP1AQ9HD42 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC15.05■□□□□ 0
CHMP1AQ9HD42 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
CHMP1AQ9HD42 OTUD3-201ENST00000375120 6397 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 TSHZ1-204ENST00000580243 3582 ntAPPRIS P1 TSL 2 BASIC15.05■□□□□ 0
CHMP1AQ9HD42 CBX1-201ENST00000225603 2232 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 UBE3A-207ENST00000614096 8741 ntAPPRIS ALT1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 LZTR1-201ENST00000215739 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
CHMP1AQ9HD42 AL162727.3-201ENST00000635661 2787 ntBASIC15.05■□□□□ 0
CHMP1AQ9HD42 CACNA1I-203ENST00000404898 9892 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
CHMP1AQ9HD42 INGX-201ENST00000359239 846 ntBASIC15.05■□□□□ -0
CHMP1AQ9HD42 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 AP000523.1-201ENST00000398242 1049 ntBASIC15.05■□□□□ -0
CHMP1AQ9HD42 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC15.05■□□□□ -0
CHMP1AQ9HD42 MIR3917-201ENST00000580971 93 ntBASIC15.05■□□□□ -0
CHMP1AQ9HD42 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC15.05■□□□□ -0
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms