Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.53■□□□□ 0.56
PAAF1Q9BRP4 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
PAAF1Q9BRP4 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 PC-214ENST00000628663 1470 ntTSL 5 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC18.52■□□□□ 0.56
PAAF1Q9BRP4 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PAAF1Q9BRP4 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.55
PAAF1Q9BRP4 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC18.52■□□□□ 0.55
PAAF1Q9BRP4 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.55
PAAF1Q9BRP4 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 ARFGAP2-229ENST00000627920 2613 ntTSL 2 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 AC096734.2-201ENST00000562054 433 ntBASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 AQP6-205ENST00000618286 829 ntTSL 5 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 AC008764.6-201ENST00000595909 2069 ntBASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
PAAF1Q9BRP4 BCAR1-209ENST00000546196 1340 ntBASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 NOC2LP1-202ENST00000452600 2235 ntBASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 RHOQP3-201ENST00000437982 621 ntBASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 DNAJB3-202ENST00000449667 1266 ntBASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 AL078644.1-201ENST00000609881 752 ntBASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 SSBP3-203ENST00000371319 1578 ntAPPRIS ALT1 TSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
PAAF1Q9BRP4 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 PAWRP1-201ENST00000451083 565 ntBASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 KRT19P2-202ENST00000557173 1012 ntBASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 AC005829.1-201ENST00000570002 483 ntBASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 GBGT1-203ENST00000372040 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC18.49■□□□□ 0.55
PAAF1Q9BRP4 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms