Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC15.26■□□□□ 0.03
NKX3-1Q99801 AL139384.1-201ENST00000612143 3047 ntBASIC15.25■□□□□ 0.03
NKX3-1Q99801 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 AL121761.2-201ENST00000598007 1648 ntBASIC15.25■□□□□ 0.03
NKX3-1Q99801 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 AC092171.3-201ENST00000610122 2651 ntBASIC15.25■□□□□ 0.03
NKX3-1Q99801 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 HES2-202ENST00000377836 507 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 ASF1B-205ENST00000592798 769 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 CICP6-201ENST00000457191 2729 ntBASIC15.25■□□□□ 0.03
NKX3-1Q99801 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.25■□□□□ 0.03
NKX3-1Q99801 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
NKX3-1Q99801 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 PSMD4-201ENST00000368881 1333 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 NPC1L1-203ENST00000423141 2554 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 HMGB3P22-201ENST00000442010 597 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 ABHD14B-208ENST00000525795 980 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 AC010203.1-204ENST00000548782 407 ntBASIC15.24■□□□□ 0.03
NKX3-1Q99801 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 NEK4P2-201ENST00000580004 1012 ntBASIC15.24■□□□□ 0.03
NKX3-1Q99801 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 AC004263.2-201ENST00000617183 678 ntBASIC15.24■□□□□ 0.03
NKX3-1Q99801 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 FUK-207ENST00000571514 3054 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.24■□□□□ 0.03
NKX3-1Q99801 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
NKX3-1Q99801 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 MAN2A2-216ENST00000559717 6704 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC15.23■□□□□ 0.03
NKX3-1Q99801 FIS1-207ENST00000474120 915 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
NKX3-1Q99801 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms