Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
VPS35Q96QK1 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 ENSA-206ENST00000361631 725 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 HIST2H3DP1-201ENST00000401004 416 ntBASIC17.32■□□□□ 0.36
VPS35Q96QK1 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 AC008738.3-201ENST00000589932 659 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 AC104692.2-201ENST00000603054 253 ntBASIC17.32■□□□□ 0.36
VPS35Q96QK1 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 RBCK1-203ENST00000382181 2208 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC17.32■□□□□ 0.36
VPS35Q96QK1 SHANK1-201ENST00000293441 6643 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
VPS35Q96QK1 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 GABRG3-206ENST00000555083 1405 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 NAA50-209ENST00000497525 1385 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 LYSMD4-203ENST00000378904 2122 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 SIGLEC30P-201ENST00000455569 941 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 SART3-203ENST00000546611 1184 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 AL160237.2-201ENST00000556165 472 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 PML-221ENST00000569965 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 NKAPP1-205ENST00000585790 367 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 TK1-204ENST00000590430 683 ntTSL 3 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AL138688.1-201ENST00000624851 1594 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AC067852.2-201ENST00000590513 2313 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.31■□□□□ 0.36
VPS35Q96QK1 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 WDR90-202ENST00000315764 1454 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
VPS35Q96QK1 AC011270.2-201ENST00000624293 2550 ntBASIC17.31■□□□□ 0.36
VPS35Q96QK1 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 TRIM60-203ENST00000508504 1674 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 PGM5-202ENST00000396396 3338 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 UPK3A-202ENST00000396082 627 ntAPPRIS ALT2 TSL 1 (best) BASIC17.3■□□□□ 0.36
VPS35Q96QK1 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC17.3■□□□□ 0.36
VPS35Q96QK1 AC078883.2-201ENST00000441212 558 ntTSL 3 BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms