Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 MTCL1P1-201ENST00000446207 792 ntBASIC16.74■□□□□ 0.27
VMP1Q96GC9 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 AC074051.2-201ENST00000565115 352 ntBASIC16.74■□□□□ 0.27
VMP1Q96GC9 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 PRR29-207ENST00000580752 458 ntTSL 3 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 AL353801.3-201ENST00000609898 542 ntBASIC16.74■□□□□ 0.27
VMP1Q96GC9 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 TP53I11-223ENST00000627720 195 ntTSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 BRPF1-201ENST00000383829 4736 ntAPPRIS ALT1 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
VMP1Q96GC9 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC16.74■□□□□ 0.27
VMP1Q96GC9 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 RFXANK-205ENST00000456252 1325 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 DLK2-203ENST00000372488 1590 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 C18orf21-205ENST00000592875 1581 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 AC132938.6-201ENST00000623828 1655 ntBASIC16.73■□□□□ 0.27
VMP1Q96GC9 TADA3-202ENST00000343450 2554 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 SLC3A2-201ENST00000338663 1904 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 H2AFV-201ENST00000222690 3804 ntAPPRIS ALT1 TSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 UFD1-202ENST00000399523 1007 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 ELOB-202ENST00000409477 997 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 KRT17P6-201ENST00000453795 1220 ntBASIC16.73■□□□□ 0.27
VMP1Q96GC9 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 PNN-202ENST00000553331 656 ntTSL 3 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 AL513523.2-201ENST00000633218 660 ntTSL 3 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 CDH22-203ENST00000537909 3902 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 AC093677.2-201ENST00000600169 1863 ntBASIC16.73■□□□□ 0.27
VMP1Q96GC9 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.73■□□□□ 0.27
VMP1Q96GC9 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
VMP1Q96GC9 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SDHA-213ENST00000510361 2148 ntTSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 TLCD1-201ENST00000292090 1017 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 RPS19BP1-201ENST00000334678 927 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.72■□□□□ 0.27
VMP1Q96GC9 AL845331.1-201ENST00000424978 1190 ntBASIC16.72■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 43.2 ms