Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 AR-209ENST00000613054 3532 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 C14orf93-204ENST00000397377 1776 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 NDOR1-203ENST00000427047 2315 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 RBFOX1-207ENST00000547338 1513 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 AC027612.4-201ENST00000605371 583 ntBASIC17.43■□□□□ 0.38
HMGB4Q8WW32 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 ORC5-208ENST00000626700 344 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 AC026471.1-201ENST00000564629 3026 ntBASIC17.43■□□□□ 0.38
HMGB4Q8WW32 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 ATP6AP2-214ENST00000636287 1904 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HMGB4Q8WW32 ITGB5-201ENST00000296181 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 BMP2K-208ENST00000628286 3848 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 CXCL1P1-201ENST00000502804 216 ntBASIC17.42■□□□□ 0.38
HMGB4Q8WW32 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HMGB4Q8WW32 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 KIAA1549-201ENST00000422774 6283 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 XXYLT1-204ENST00000429994 865 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 ACTG1P14-201ENST00000446382 1122 ntBASIC17.41■□□□□ 0.38
HMGB4Q8WW32 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 AC093028.1-201ENST00000622998 982 ntBASIC17.41■□□□□ 0.38
HMGB4Q8WW32 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 RRP7BP-201ENST00000357802 2375 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 GATM-201ENST00000396659 2597 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 MARVELD3-202ENST00000299952 2214 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 REM2-202ENST00000536884 1331 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB4Q8WW32 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms