Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 RRAS-201ENST00000246792 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 SERPINH1P1-201ENST00000419794 1249 ntBASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 LMCD1-AS1-204ENST00000446281 932 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 AC006970.2-201ENST00000450065 779 ntBASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 NME1-207ENST00000480143 964 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 DLX3-202ENST00000512495 834 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 AC105036.2-201ENST00000569468 176 ntBASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 FBN3-205ENST00000600128 9362 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 HS2ST1-201ENST00000370550 6736 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 MIR600HG-201ENST00000449175 5984 ntBASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 GRM1-201ENST00000282753 6622 ntAPPRIS P3 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 ANTXRL-205ENST00000620264 2206 ntAPPRIS P2 TSL 5 BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 KCNC2-208ENST00000549446 5625 ntAPPRIS P4 TSL 1 (best) BASIC14.6□□□□□ -0.07
CCDC28AQ8IWP9 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PEX5-207ENST00000455147 2689 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 FAM186B-201ENST00000257894 2944 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PTN-201ENST00000348225 1614 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 TGIF2-202ENST00000373874 3432 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 USP31-203ENST00000567975 2142 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PRKCSH-217ENST00000592741 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AL359183.1-201ENST00000623796 2132 ntBASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AL355472.2-201ENST00000422958 438 ntBASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 HOXD11-201ENST00000249504 1533 ntAPPRIS P1 TSL 3 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AL390860.1-201ENST00000449298 1541 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AC079781.5-202ENST00000641784 3743 ntBASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 EEPD1-205ENST00000534978 2769 ntAPPRIS P1 TSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 NFATC4-204ENST00000424781 5488 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 CDK5RAP2-202ENST00000360190 5985 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 SLC4A2-202ENST00000413384 4142 ntAPPRIS P3 TSL 1 (best) BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC14.59□□□□□ -0.07
CCDC28AQ8IWP9 PRPH-201ENST00000257860 3245 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 RNASET2-203ENST00000366855 1417 ntTSL 5 BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 AC010247.2-201ENST00000559786 1955 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 CTBP1-AS2-205ENST00000578730 2757 ntTSL 2 BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.58□□□□□ -0.07
CCDC28AQ8IWP9 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 NAT6-204ENST00000443094 1464 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 DDX1-202ENST00000381341 2817 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 AC060834.1-201ENST00000443027 2032 ntBASIC14.58□□□□□ -0.08
CCDC28AQ8IWP9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Retrieved 100 of 98,524 protein–RNA pairs in 24.1 ms