Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 AC005225.4-201ENST00000557330 545 ntBASIC16.76■□□□□ 0.27
COL28A1Q2UY09 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
COL28A1Q2UY09 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 HCLS1-201ENST00000314583 2000 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 KIF21B-203ENST00000422435 5519 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 ZNF710-201ENST00000268154 4617 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 EEPD1-201ENST00000242108 4765 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 MARK4-210ENST00000620044 2105 ntTSL 5 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 KRT18P27-201ENST00000427733 1299 ntBASIC16.75■□□□□ 0.27
COL28A1Q2UY09 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 AC006557.2-201ENST00000592985 1240 ntBASIC16.75■□□□□ 0.27
COL28A1Q2UY09 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 TAL1-201ENST00000294339 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 IAH1-202ENST00000470914 2137 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
COL28A1Q2UY09 ADGRG2-209ENST00000379876 4779 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AC125634.1-201ENST00000438758 1403 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 MRPL20P1-201ENST00000400819 433 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 HLA-DRB6-201ENST00000411500 1235 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 BX005266.1-201ENST00000473402 457 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AP000344.2-201ENST00000512987 629 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 DUT-210ENST00000559935 569 ntTSL 3 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.74■□□□□ 0.27
COL28A1Q2UY09 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 KCNQ2-205ENST00000360480 2775 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 DOC2A-208ENST00000564944 1782 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.74■□□□□ 0.27
COL28A1Q2UY09 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC16.73■□□□□ 0.27
COL28A1Q2UY09 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms