Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 AL023806.1-201ENST00000603994 1649 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 OSTF1-201ENST00000346234 1319 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 AC016027.1-202ENST00000607927 1699 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 UTP18-201ENST00000225298 1894 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 GJB3-202ENST00000373366 2217 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 VMAC-201ENST00000339485 2254 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 ELK2AP-201ENST00000392510 1007 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 MIR663B-201ENST00000408361 115 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 IFNL3-201ENST00000413851 656 ntAPPRIS P2 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 ZNF815P-202ENST00000422825 805 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 HLA-V-204ENST00000476601 1289 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC10.65□□□□□ -0.7
HSPG2P98160 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC10.65□□□□□ -0.7
HSPG2P98160 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC10.65□□□□□ -0.7
HSPG2P98160 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC10.65□□□□□ -0.7
HSPG2P98160 ANO7L1-203ENST00000602586 1720 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 KRT8P44-201ENST00000441609 1350 ntBASIC10.65□□□□□ -0.7
HSPG2P98160 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC10.65□□□□□ -0.71
HSPG2P98160 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
HSPG2P98160 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC10.65□□□□□ -0.71
HSPG2P98160 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
HSPG2P98160 DUTP2-201ENST00000519164 463 ntBASIC10.65□□□□□ -0.71
HSPG2P98160 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC10.65□□□□□ -0.71
HSPG2P98160 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC10.65□□□□□ -0.71
HSPG2P98160 FBXO15-201ENST00000419743 1708 ntAPPRIS P2 TSL 2 BASIC10.65□□□□□ -0.71
HSPG2P98160 FKBPL-201ENST00000375156 1345 ntAPPRIS P1 TSL 1 (best) BASIC10.65□□□□□ -0.71
HSPG2P98160 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 PAAF1-207ENST00000536003 1639 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 ELK1P1-201ENST00000485699 580 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC10.64□□□□□ -0.71
HSPG2P98160 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC10.64□□□□□ -0.71
HSPG2P98160 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 AL009183.1-201ENST00000603760 355 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 AL391825.1-201ENST00000457671 1364 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 WNK1-203ENST00000447667 1902 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC10.64□□□□□ -0.71
HSPG2P98160 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 AL138918.1-201ENST00000568306 659 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 KCNJ5-201ENST00000338350 1734 ntAPPRIS P1 TSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC10.64□□□□□ -0.71
HSPG2P98160 USP39-202ENST00000409025 1946 ntTSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 BANF1P1-201ENST00000553684 263 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 TMEM261P1-201ENST00000604899 340 ntBASIC10.64□□□□□ -0.71
HSPG2P98160 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC10.64□□□□□ -0.71
HSPG2P98160 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC10.64□□□□□ -0.71
HSPG2P98160 C2orf68-202ENST00000409734 1722 ntTSL 2 BASIC10.64□□□□□ -0.71
HSPG2P98160 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC10.63□□□□□ -0.71
HSPG2P98160 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC10.63□□□□□ -0.71
HSPG2P98160 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC10.63□□□□□ -0.71
HSPG2P98160 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC10.63□□□□□ -0.71
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms