Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 ZDHHC20-202ENST00000382466 5338 ntAPPRIS P3 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC14.96□□□□□ -0.01
ABCA4P78363 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
ABCA4P78363 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC14.96□□□□□ -0.01
ABCA4P78363 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC14.96□□□□□ -0.01
ABCA4P78363 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 TFAP2A-AS1-201ENST00000420777 1575 ntTSL 5 BASIC14.96□□□□□ -0.01
ABCA4P78363 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 CEND1P1-201ENST00000451006 455 ntBASIC14.96□□□□□ -0.01
ABCA4P78363 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC14.96□□□□□ -0.01
ABCA4P78363 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC14.96□□□□□ -0.01
ABCA4P78363 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
ABCA4P78363 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC14.96□□□□□ -0.02
ABCA4P78363 FAM72C-202ENST00000584486 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
ABCA4P78363 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
ABCA4P78363 PLK1-201ENST00000300093 2227 ntAPPRIS P1 TSL 1 (best) BASIC14.96□□□□□ -0.02
ABCA4P78363 GGNBP2-210ENST00000611219 2315 ntTSL 2 BASIC14.96□□□□□ -0.02
ABCA4P78363 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 PLEKHB2-204ENST00000409158 2277 ntTSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 RAPGEF5-203ENST00000405243 2800 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 AC025580.3-201ENST00000617932 1424 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 AC142086.1-202ENST00000398669 1839 ntTSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 MYL6-202ENST00000348108 722 ntAPPRIS ALT1 TSL 3 BASIC14.95□□□□□ -0.02
ABCA4P78363 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 NABP1-203ENST00000409510 843 ntTSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 AC005498.2-205ENST00000593218 784 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 AC068137.2-201ENST00000605408 478 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 AC004790.2-201ENST00000623588 572 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 TRAF3-203ENST00000392745 2459 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 AC008969.1-203ENST00000313957 1897 ntTSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 AC009336.1-201ENST00000608941 1553 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC14.95□□□□□ -0.02
ABCA4P78363 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 AC003669.1-201ENST00000334569 611 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.95□□□□□ -0.02
ABCA4P78363 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.95□□□□□ -0.02
ABCA4P78363 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.95□□□□□ -0.02
ABCA4P78363 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 AC087641.1-201ENST00000557561 1021 ntBASIC14.95□□□□□ -0.02
ABCA4P78363 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC14.95□□□□□ -0.02
ABCA4P78363 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC14.95□□□□□ -0.02
ABCA4P78363 CITED2-204ENST00000618718 901 ntTSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC14.95□□□□□ -0.02
ABCA4P78363 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 DAPK2-202ENST00000457488 1741 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.95□□□□□ -0.02
ABCA4P78363 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC14.95□□□□□ -0.02
ABCA4P78363 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 AC117500.2-201ENST00000508145 1561 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC14.94□□□□□ -0.02
ABCA4P78363 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC14.94□□□□□ -0.02
ABCA4P78363 AP000695.1-201ENST00000429588 893 ntTSL 3 BASIC14.94□□□□□ -0.02
ABCA4P78363 AC023141.5-201ENST00000458585 616 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 AC022145.2-201ENST00000598203 171 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 MED16-214ENST00000617672 554 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 AC007064.4-201ENST00000637740 555 ntBASIC14.94□□□□□ -0.02
ABCA4P78363 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC14.94□□□□□ -0.02
ABCA4P78363 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC14.94□□□□□ -0.02
ABCA4P78363 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.94□□□□□ -0.02
ABCA4P78363 BTBD11-201ENST00000280758 5767 ntAPPRIS P3 TSL 5 BASIC14.94□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms