Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 GTF2H4-201ENST00000259895 1735 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 CRKL-201ENST00000354336 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 S100A2-206ENST00000497140 697 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 MIR22HG-204ENST00000571595 767 ntTSL 5 BASIC19.2■□□□□ 0.66
PEX3P56589 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC19.2■□□□□ 0.66
PEX3P56589 AC064862.7-201ENST00000604520 867 ntBASIC19.2■□□□□ 0.66
PEX3P56589 AL773604.1-201ENST00000617417 272 ntBASIC19.2■□□□□ 0.66
PEX3P56589 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC19.2■□□□□ 0.66
PEX3P56589 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 BOC-212ENST00000485230 2173 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 AL135999.2-201ENST00000622438 1686 ntBASIC19.2■□□□□ 0.66
PEX3P56589 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
PEX3P56589 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PEX3P56589 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC19.2■□□□□ 0.66
PEX3P56589 PGR-201ENST00000263463 2496 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 AC097637.2-201ENST00000624096 1997 ntBASIC19.19■□□□□ 0.66
PEX3P56589 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 CLMP-201ENST00000448775 5072 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 PP12613-201ENST00000424958 2230 ntBASIC19.19■□□□□ 0.66
PEX3P56589 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 MRPL28-201ENST00000199706 1098 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PEX3P56589 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
PEX3P56589 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC19.19■□□□□ 0.66
PEX3P56589 PPIE-208ENST00000470213 927 ntTSL 3 BASIC19.19■□□□□ 0.66
PEX3P56589 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC19.19■□□□□ 0.66
PEX3P56589 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC19.19■□□□□ 0.66
PEX3P56589 PSME1-205ENST00000559123 1033 ntTSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 MAP1LC3B-207ENST00000565788 625 ntTSL 2 BASIC19.19■□□□□ 0.66
PEX3P56589 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC19.19■□□□□ 0.66
PEX3P56589 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 TPR-209ENST00000613151 2478 ntTSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC19.19■□□□□ 0.66
PEX3P56589 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PEX3P56589 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 ASCC2-223ENST00000542393 2594 ntTSL 2 BASIC19.18■□□□□ 0.66
PEX3P56589 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC19.18■□□□□ 0.66
PEX3P56589 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 AL031284.1-201ENST00000419297 478 ntBASIC19.18■□□□□ 0.66
PEX3P56589 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC19.18■□□□□ 0.66
PEX3P56589 OR7E14P-202ENST00000530490 1290 ntBASIC19.18■□□□□ 0.66
PEX3P56589 AL662844.1-201ENST00000546340 181 ntBASIC19.18■□□□□ 0.66
PEX3P56589 TUBA1A-203ENST00000546918 984 ntTSL 3 BASIC19.18■□□□□ 0.66
PEX3P56589 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PEX3P56589 YKT6-201ENST00000223369 2696 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
PEX3P56589 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PEX3P56589 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC19.18■□□□□ 0.66
PEX3P56589 TBXAS1-206ENST00000425687 2080 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PEX3P56589 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 AC026471.1-201ENST00000564629 3026 ntBASIC19.17■□□□□ 0.66
PEX3P56589 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
PEX3P56589 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC19.17■□□□□ 0.66
PEX3P56589 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC19.17■□□□□ 0.66
PEX3P56589 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
PEX3P56589 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms