Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 GPS2P2-201ENST00000430745 888 ntBASIC18.5■□□□□ 0.55
COL4A4P53420 FAM207CP-201ENST00000443486 507 ntBASIC18.5■□□□□ 0.55
COL4A4P53420 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
COL4A4P53420 IQSEC2-204ENST00000485377 835 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A4P53420 GCHFR-204ENST00000559445 626 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.5■□□□□ 0.55
COL4A4P53420 CECR7-204ENST00000609932 568 ntTSL 2 BASIC18.5■□□□□ 0.55
COL4A4P53420 AC008761.3-201ENST00000624803 892 ntBASIC18.5■□□□□ 0.55
COL4A4P53420 PC-208ENST00000529047 1607 ntTSL 3 BASIC18.5■□□□□ 0.55
COL4A4P53420 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
COL4A4P53420 BX276092.7-203ENST00000637198 1536 ntBASIC18.49■□□□□ 0.55
COL4A4P53420 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A4P53420 HOXA-AS3-205ENST00000524304 2063 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 AC097637.2-201ENST00000624096 1997 ntBASIC18.49■□□□□ 0.55
COL4A4P53420 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
COL4A4P53420 AL121761.2-201ENST00000598007 1648 ntBASIC18.49■□□□□ 0.55
COL4A4P53420 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 NME1-NME2-202ENST00000393193 1021 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC18.49■□□□□ 0.55
COL4A4P53420 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 REXO1L3P-201ENST00000622202 1288 ntBASIC18.49■□□□□ 0.55
COL4A4P53420 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC18.49■□□□□ 0.55
COL4A4P53420 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 PCDHA1-202ENST00000394633 2204 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
COL4A4P53420 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC18.48■□□□□ 0.55
COL4A4P53420 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A4P53420 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC18.48■□□□□ 0.55
COL4A4P53420 CRB3P1-201ENST00000449338 276 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 TSPY16P-201ENST00000449843 468 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 KLF2P3-201ENST00000451977 1087 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 TERF1P3-201ENST00000505638 1227 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 STK25P1-201ENST00000585406 838 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A4P53420 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A4P53420 ACTL9-202ENST00000612068 1252 ntBASIC18.48■□□□□ 0.55
COL4A4P53420 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A4P53420 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A4P53420 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A4P53420 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC18.48■□□□□ 0.55
COL4A4P53420 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 CD276-201ENST00000318424 2738 ntTSL 5 BASIC18.48■□□□□ 0.55
COL4A4P53420 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC18.48■□□□□ 0.55
COL4A4P53420 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
COL4A4P53420 SRSF1-201ENST00000258962 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 COX5BP2-201ENST00000392354 334 ntBASIC18.47■□□□□ 0.55
COL4A4P53420 GAPDHP21-201ENST00000450301 1010 ntBASIC18.47■□□□□ 0.55
COL4A4P53420 HADHB-208ENST00000537713 2142 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC18.47■□□□□ 0.55
COL4A4P53420 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.47■□□□□ 0.55
COL4A4P53420 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC18.47■□□□□ 0.55
COL4A4P53420 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC18.47■□□□□ 0.55
COL4A4P53420 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
COL4A4P53420 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.47■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms