Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC21.49■■□□□ 1.03
NUP98P52948 LINC00628-201ENST00000628516 1289 ntBASIC21.49■■□□□ 1.03
NUP98P52948 SLC7A9-204ENST00000590341 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NUP98P52948 FAM206A-201ENST00000322940 2134 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NUP98P52948 AKAP8P1-201ENST00000434743 1349 ntBASIC21.49■■□□□ 1.03
NUP98P52948 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NUP98P52948 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC21.48■■□□□ 1.03
NUP98P52948 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC21.48■■□□□ 1.03
NUP98P52948 AC069335.1-201ENST00000489972 472 ntBASIC21.48■■□□□ 1.03
NUP98P52948 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC21.48■■□□□ 1.03
NUP98P52948 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC21.48■■□□□ 1.03
NUP98P52948 AC004449.1-201ENST00000564240 433 ntBASIC21.48■■□□□ 1.03
NUP98P52948 RARRES2P8-201ENST00000566335 367 ntBASIC21.48■■□□□ 1.03
NUP98P52948 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC21.48■■□□□ 1.03
NUP98P52948 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 AJ011932.1-201ENST00000621707 465 ntBASIC21.48■■□□□ 1.03
NUP98P52948 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
NUP98P52948 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 AC133963.1-201ENST00000504166 1679 ntBASIC21.48■■□□□ 1.03
NUP98P52948 CD37-201ENST00000323906 1265 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NUP98P52948 AL035633.1-201ENST00000406139 838 ntBASIC21.48■■□□□ 1.03
NUP98P52948 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 CD7-202ENST00000578509 925 ntTSL 3 BASIC21.48■■□□□ 1.03
NUP98P52948 MIR3197-201ENST00000582241 73 ntBASIC21.48■■□□□ 1.03
NUP98P52948 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC21.48■■□□□ 1.03
NUP98P52948 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC21.48■■□□□ 1.03
NUP98P52948 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC21.47■■□□□ 1.03
NUP98P52948 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 HYAL3-205ENST00000450982 1402 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
NUP98P52948 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC21.47■■□□□ 1.03
NUP98P52948 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NUP98P52948 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NUP98P52948 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC21.47■■□□□ 1.03
NUP98P52948 FAM8A3P-201ENST00000427218 844 ntBASIC21.47■■□□□ 1.03
NUP98P52948 DAD1-205ENST00000543337 501 ntTSL 3 BASIC21.47■■□□□ 1.03
NUP98P52948 MIR4515-201ENST00000584082 81 ntBASIC21.47■■□□□ 1.03
NUP98P52948 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC21.47■■□□□ 1.03
NUP98P52948 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NUP98P52948 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC21.47■■□□□ 1.03
NUP98P52948 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.47■■□□□ 1.03
NUP98P52948 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 AC135050.7-201ENST00000624508 2218 ntBASIC21.46■■□□□ 1.03
NUP98P52948 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 CD81-202ENST00000381036 880 ntTSL 3 BASIC21.46■■□□□ 1.03
NUP98P52948 HMGA1P7-201ENST00000406908 502 ntBASIC21.46■■□□□ 1.03
NUP98P52948 WDR53-203ENST00000429115 683 ntTSL 2 BASIC21.46■■□□□ 1.03
NUP98P52948 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 ARPIN-202ENST00000460685 2145 ntTSL 2 BASIC21.46■■□□□ 1.03
NUP98P52948 INO80E-210ENST00000567705 880 ntTSL 3 BASIC21.46■■□□□ 1.03
NUP98P52948 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC21.46■■□□□ 1.03
NUP98P52948 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NUP98P52948 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 LINC00029-201ENST00000370341 1631 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.46■■□□□ 1.03
NUP98P52948 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 PDE4D-204ENST00000358923 2969 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC21.46■■□□□ 1.03
NUP98P52948 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
NUP98P52948 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NUP98P52948 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 AC002056.1-201ENST00000395613 760 ntBASIC21.45■■□□□ 1.03
NUP98P52948 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 FAM58DP-201ENST00000428076 619 ntBASIC21.45■■□□□ 1.03
NUP98P52948 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.03
NUP98P52948 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC21.45■■□□□ 1.03
NUP98P52948 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC21.45■■□□□ 1.03
NUP98P52948 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC21.45■■□□□ 1.03
NUP98P52948 AC243562.1-201ENST00000560672 389 ntBASIC21.45■■□□□ 1.03
NUP98P52948 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NUP98P52948 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NUP98P52948 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC21.45■■□□□ 1.02
NUP98P52948 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
NUP98P52948 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
NUP98P52948 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
NUP98P52948 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.45■■□□□ 1.02
NUP98P52948 AC005412.3-201ENST00000580309 715 ntBASIC21.45■■□□□ 1.02
NUP98P52948 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC21.45■■□□□ 1.02
NUP98P52948 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC21.45■■□□□ 1.02
NUP98P52948 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NUP98P52948 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC21.45■■□□□ 1.02
NUP98P52948 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms