Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AL033527.4-201ENST00000641026 673 ntBASIC20.1■□□□□ 0.81
CTCFP49711 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC20.1■□□□□ 0.81
CTCFP49711 DBNDD2-204ENST00000372712 1537 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 MIXL1-201ENST00000366810 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.1■□□□□ 0.81
CTCFP49711 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 ADGRD2-201ENST00000334810 3244 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC20.1■□□□□ 0.81
CTCFP49711 SRSF2-202ENST00000359995 1927 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 TM9SF1-203ENST00000524835 1938 ntTSL 2 BASIC20.1■□□□□ 0.81
CTCFP49711 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 ZDHHC3-205ENST00000424952 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC20.09■□□□□ 0.81
CTCFP49711 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.09■□□□□ 0.81
CTCFP49711 PLD4-204ENST00000540372 2007 ntAPPRIS ALT2 TSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 AC092933.1-201ENST00000393644 945 ntBASIC20.09■□□□□ 0.81
CTCFP49711 BCYRN1-201ENST00000418539 200 ntBASIC20.09■□□□□ 0.81
CTCFP49711 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 GZMH-203ENST00000557220 520 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 TBC1D16-205ENST00000572862 1141 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 FCER2-202ENST00000360067 1482 ntAPPRIS ALT2 TSL 5 BASIC20.09■□□□□ 0.81
CTCFP49711 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC20.09■□□□□ 0.81
CTCFP49711 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
CTCFP49711 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 BACE1-204ENST00000445823 1408 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
CTCFP49711 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 TBPL1-208ENST00000613034 1625 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC20.09■□□□□ 0.81
CTCFP49711 AC132938.5-201ENST00000624980 1813 ntBASIC20.09■□□□□ 0.81
CTCFP49711 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 ARHGAP11A-208ENST00000567348 2422 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC20.08■□□□□ 0.81
CTCFP49711 AC099343.3-201ENST00000605834 2503 ntBASIC20.08■□□□□ 0.81
CTCFP49711 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 EIF2B1-201ENST00000424014 2477 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 IRF7-203ENST00000397566 2051 ntAPPRIS P4 TSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC20.08■□□□□ 0.81
CTCFP49711 NFYC-AS1-201ENST00000606277 1687 ntBASIC20.08■□□□□ 0.81
CTCFP49711 FAM86MP-201ENST00000340703 885 ntBASIC20.08■□□□□ 0.81
CTCFP49711 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
CTCFP49711 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
CTCFP49711 KLF4P1-201ENST00000412782 1185 ntBASIC20.08■□□□□ 0.81
CTCFP49711 AC112492.5-201ENST00000421897 457 ntBASIC20.08■□□□□ 0.81
CTCFP49711 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC20.08■□□□□ 0.81
CTCFP49711 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC20.08■□□□□ 0.81
CTCFP49711 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC20.08■□□□□ 0.81
CTCFP49711 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC20.08■□□□□ 0.81
CTCFP49711 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC20.08■□□□□ 0.81
CTCFP49711 KRT17P8-201ENST00000540749 863 ntBASIC20.08■□□□□ 0.81
CTCFP49711 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC20.08■□□□□ 0.81
CTCFP49711 AC106886.1-201ENST00000568660 600 ntBASIC20.08■□□□□ 0.81
CTCFP49711 MIR6080-201ENST00000617359 66 ntBASIC20.08■□□□□ 0.81
CTCFP49711 P2RY6-212ENST00000618468 2431 ntAPPRIS P1 TSL 3 BASIC20.08■□□□□ 0.8
CTCFP49711 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CTCFP49711 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
CTCFP49711 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CTCFP49711 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC20.08■□□□□ 0.8
CTCFP49711 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
CTCFP49711 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC20.08■□□□□ 0.8
CTCFP49711 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
CTCFP49711 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
CTCFP49711 CORO1B-201ENST00000341356 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 FAM198A-202ENST00000430121 3121 ntAPPRIS P2 TSL 5 BASIC20.07■□□□□ 0.8
CTCFP49711 PRKCSH-209ENST00000589838 1898 ntAPPRIS P3 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 MEF2B-201ENST00000409224 1683 ntTSL 2 BASIC20.07■□□□□ 0.8
CTCFP49711 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC20.07■□□□□ 0.8
CTCFP49711 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC20.07■□□□□ 0.8
CTCFP49711 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 MXI1-205ENST00000393134 889 ntTSL 2 BASIC20.07■□□□□ 0.8
CTCFP49711 PSMB11-201ENST00000408907 2110 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
CTCFP49711 AC022210.1-201ENST00000449856 793 ntBASIC20.07■□□□□ 0.8
CTCFP49711 INE1-201ENST00000456273 945 ntBASIC20.07■□□□□ 0.8
CTCFP49711 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC20.07■□□□□ 0.8
CTCFP49711 IGHV3-62-201ENST00000520057 340 ntBASIC20.07■□□□□ 0.8
CTCFP49711 TPT1-AS1-219ENST00000523506 574 ntTSL 4 BASIC20.07■□□□□ 0.8
CTCFP49711 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC20.07■□□□□ 0.8
CTCFP49711 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC20.07■□□□□ 0.8
CTCFP49711 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC20.07■□□□□ 0.8
CTCFP49711 AL391650.2-201ENST00000640097 941 ntTSL 5 BASIC20.07■□□□□ 0.8
CTCFP49711 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
CTCFP49711 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms