Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC15.36■□□□□ 0.05
CX3CR1P49238 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 AC115618.1-201ENST00000376775 549 ntTSL 3 BASIC15.36■□□□□ 0.05
CX3CR1P49238 TFPT-203ENST00000391759 1205 ntAPPRIS P3 TSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.36■□□□□ 0.05
CX3CR1P49238 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 AL592071.1-201ENST00000611956 408 ntBASIC15.36■□□□□ 0.05
CX3CR1P49238 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC15.36■□□□□ 0.05
CX3CR1P49238 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.36■□□□□ 0.05
CX3CR1P49238 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC15.36■□□□□ 0.05
CX3CR1P49238 SOD2-215ENST00000546087 2558 ntTSL 2 BASIC15.36■□□□□ 0.05
CX3CR1P49238 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC15.36■□□□□ 0.05
CX3CR1P49238 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC15.36■□□□□ 0.05
CX3CR1P49238 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 AC097374.2-201ENST00000618617 1306 ntBASIC15.36■□□□□ 0.05
CX3CR1P49238 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC15.36■□□□□ 0.05
CX3CR1P49238 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 COX5BP2-201ENST00000392354 334 ntBASIC15.35■□□□□ 0.05
CX3CR1P49238 RPL8-202ENST00000394920 965 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 AC073111.4-202ENST00000486297 585 ntTSL 4 BASIC15.35■□□□□ 0.05
CX3CR1P49238 AC002558.1-201ENST00000488906 803 ntBASIC15.35■□□□□ 0.05
CX3CR1P49238 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 AL139327.4-201ENST00000612362 153 ntBASIC15.35■□□□□ 0.05
CX3CR1P49238 AC124864.1-201ENST00000623408 392 ntBASIC15.35■□□□□ 0.05
CX3CR1P49238 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC15.35■□□□□ 0.05
CX3CR1P49238 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC15.35■□□□□ 0.05
CX3CR1P49238 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC15.35■□□□□ 0.05
CX3CR1P49238 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC15.35■□□□□ 0.05
CX3CR1P49238 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC15.34■□□□□ 0.05
CX3CR1P49238 AC016396.2-201ENST00000562575 1417 ntBASIC15.34■□□□□ 0.05
CX3CR1P49238 CLEC10A-204ENST00000571664 1442 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 TOM1L2-207ENST00000535933 1748 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 SNAPC4-201ENST00000298532 5010 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 SUV39H2-204ENST00000378325 1292 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC15.34■□□□□ 0.05
CX3CR1P49238 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC15.34■□□□□ 0.05
CX3CR1P49238 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 ACY1-210ENST00000494103 1298 ntTSL 3 BASIC15.34■□□□□ 0.05
CX3CR1P49238 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC15.34■□□□□ 0.05
CX3CR1P49238 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 AC011498.5-201ENST00000592027 486 ntBASIC15.34■□□□□ 0.05
CX3CR1P49238 NDUFV2-AS1-203ENST00000608008 779 ntBASIC15.34■□□□□ 0.05
CX3CR1P49238 IGHV3-41-201ENST00000613121 348 ntBASIC15.34■□□□□ 0.05
CX3CR1P49238 VPS72-207ENST00000640458 689 ntTSL 5 BASIC15.34■□□□□ 0.05
CX3CR1P49238 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC15.34■□□□□ 0.05
CX3CR1P49238 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC15.34■□□□□ 0.05
CX3CR1P49238 PKD1P5-201ENST00000532415 10291 ntBASIC15.34■□□□□ 0.05
CX3CR1P49238 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
CX3CR1P49238 PTPRN2-204ENST00000404321 1374 ntTSL 5 BASIC15.34■□□□□ 0.05
CX3CR1P49238 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC15.34■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms