Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 RN7SL606P-201ENST00000472779 293 ntBASIC16.43■□□□□ 0.22
RFX3P48380 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 TPM1-226ENST00000560959 925 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 CDK10-208ENST00000505473 1424 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
RFX3P48380 KCNMA1-251ENST00000639090 4319 ntAPPRIS ALT2 TSL 5 BASIC16.43■□□□□ 0.22
RFX3P48380 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC16.43■□□□□ 0.22
RFX3P48380 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
RFX3P48380 CAP2-208ENST00000611958 2686 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 EVPL-201ENST00000301607 6614 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 AC099398.1-201ENST00000567919 2776 ntBASIC16.42■□□□□ 0.22
RFX3P48380 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 BCL11A-209ENST00000489516 1508 ntTSL 5 BASIC16.42■□□□□ 0.22
RFX3P48380 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.42■□□□□ 0.22
RFX3P48380 SNRPA1-201ENST00000254193 1055 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 TOB2P1-201ENST00000469761 992 ntBASIC16.42■□□□□ 0.22
RFX3P48380 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.42■□□□□ 0.22
RFX3P48380 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 BCL10-202ENST00000620248 774 ntTSL 5 BASIC16.42■□□□□ 0.22
RFX3P48380 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.42■□□□□ 0.22
RFX3P48380 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 TK2-201ENST00000299697 5114 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 DICER1-AS1-204ENST00000554631 1709 ntTSL 2 BASIC16.42■□□□□ 0.22
RFX3P48380 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.42■□□□□ 0.22
RFX3P48380 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC16.41■□□□□ 0.22
RFX3P48380 ADARB2-203ENST00000381312 8421 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.41■□□□□ 0.22
RFX3P48380 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 LINC01554-202ENST00000436592 2052 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC16.41■□□□□ 0.22
RFX3P48380 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 UPK3BP1-201ENST00000428678 509 ntBASIC16.41■□□□□ 0.22
RFX3P48380 AC092119.3-201ENST00000612618 583 ntBASIC16.41■□□□□ 0.22
RFX3P48380 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.41■□□□□ 0.22
RFX3P48380 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC16.41■□□□□ 0.22
RFX3P48380 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 GINS4-206ENST00000520710 2022 ntTSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.41■□□□□ 0.22
RFX3P48380 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC16.41■□□□□ 0.22
RFX3P48380 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
RFX3P48380 ELN-202ENST00000320399 2274 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
RFX3P48380 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 BX276092.7-203ENST00000637198 1536 ntBASIC16.4■□□□□ 0.22
RFX3P48380 RB1CC1-202ENST00000435644 6614 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC16.4■□□□□ 0.22
RFX3P48380 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
RFX3P48380 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC16.4■□□□□ 0.22
RFX3P48380 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms