Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 LINC01711-201ENST00000598340 967 ntBASIC18.11■□□□□ 0.49
PTPN9P43378 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 AL139288.1-201ENST00000623748 933 ntBASIC18.11■□□□□ 0.49
PTPN9P43378 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN9P43378 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC18.11■□□□□ 0.49
PTPN9P43378 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN9P43378 AP001094.4-201ENST00000579008 2176 ntBASIC18.11■□□□□ 0.49
PTPN9P43378 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC18.11■□□□□ 0.49
PTPN9P43378 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.11■□□□□ 0.49
PTPN9P43378 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC18.11■□□□□ 0.49
PTPN9P43378 UNC5B-201ENST00000335350 6841 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 SAR1B-208ENST00000507419 2287 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 RHBDF1P1-201ENST00000427504 1941 ntBASIC18.1■□□□□ 0.49
PTPN9P43378 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 GHRHR-205ENST00000409904 1613 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC18.1■□□□□ 0.49
PTPN9P43378 SLX1A-202ENST00000345535 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 SLX1B-202ENST00000351581 762 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 ACTG1P4-201ENST00000425123 1122 ntBASIC18.1■□□□□ 0.49
PTPN9P43378 SAPCD2P3-201ENST00000455031 850 ntBASIC18.1■□□□□ 0.49
PTPN9P43378 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.1■□□□□ 0.49
PTPN9P43378 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 MTDHP3-201ENST00000594186 672 ntBASIC18.1■□□□□ 0.49
PTPN9P43378 COPE-211ENST00000600932 1144 ntTSL 5 BASIC18.1■□□□□ 0.49
PTPN9P43378 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC18.1■□□□□ 0.49
PTPN9P43378 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PTPN9P43378 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC18.1■□□□□ 0.49
PTPN9P43378 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
PTPN9P43378 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 AC020916.1-201ENST00000587762 1774 ntBASIC18.09■□□□□ 0.49
PTPN9P43378 RTKN-203ENST00000305557 2646 ntAPPRIS P3 TSL 5 BASIC18.09■□□□□ 0.49
PTPN9P43378 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC18.09■□□□□ 0.49
PTPN9P43378 IFNL4-204ENST00000634967 1493 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC18.09■□□□□ 0.49
PTPN9P43378 DUSP5P1-201ENST00000441325 1139 ntBASIC18.09■□□□□ 0.49
PTPN9P43378 CHCHD3-203ENST00000448878 1038 ntTSL 5 BASIC18.09■□□□□ 0.49
PTPN9P43378 FGFR3P6-201ENST00000457012 610 ntBASIC18.09■□□□□ 0.49
PTPN9P43378 SMAD3-210ENST00000559092 584 ntTSL 4 BASIC18.09■□□□□ 0.49
PTPN9P43378 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC18.09■□□□□ 0.49
PTPN9P43378 IFNL4P1-201ENST00000607083 540 ntBASIC18.09■□□□□ 0.49
PTPN9P43378 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
PTPN9P43378 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
PTPN9P43378 PHGDH-208ENST00000641023 2096 ntAPPRIS P1 BASIC18.09■□□□□ 0.49
PTPN9P43378 AL356309.3-201ENST00000624132 1934 ntBASIC18.09■□□□□ 0.49
PTPN9P43378 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
PTPN9P43378 PTHLH-205ENST00000535992 1891 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
PTPN9P43378 APH1A-202ENST00000360244 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 SLC22A23-203ENST00000406686 5658 ntAPPRIS P2 TSL 5 BASIC18.09■□□□□ 0.49
PTPN9P43378 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
PTPN9P43378 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN9P43378 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN9P43378 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
PTPN9P43378 AC004817.3-201ENST00000602957 2129 ntBASIC18.08■□□□□ 0.49
PTPN9P43378 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC18.08■□□□□ 0.49
PTPN9P43378 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC18.08■□□□□ 0.49
PTPN9P43378 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.49
PTPN9P43378 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC18.08■□□□□ 0.49
PTPN9P43378 PAN3-AS1-201ENST00000563843 1351 ntBASIC18.08■□□□□ 0.49
PTPN9P43378 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 S100A2-206ENST00000497140 697 ntTSL 2 BASIC18.08■□□□□ 0.48
PTPN9P43378 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
PTPN9P43378 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC18.08■□□□□ 0.48
PTPN9P43378 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.08■□□□□ 0.48
PTPN9P43378 NKAPP1-205ENST00000585790 367 ntBASIC18.08■□□□□ 0.48
PTPN9P43378 AC011455.1-201ENST00000593830 504 ntTSL 3 BASIC18.08■□□□□ 0.48
PTPN9P43378 AC008608.2-201ENST00000606089 416 ntBASIC18.08■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms