Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 MAT2A-202ENST00000409017 1927 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN4P29074 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
PTPN4P29074 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN4P29074 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 TSSC2-201ENST00000450217 709 ntBASIC17.55■□□□□ 0.4
PTPN4P29074 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC17.55■□□□□ 0.4
PTPN4P29074 LAMTOR4-205ENST00000468582 621 ntTSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC17.55■□□□□ 0.4
PTPN4P29074 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC17.55■□□□□ 0.4
PTPN4P29074 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.55■□□□□ 0.4
PTPN4P29074 MIR3917-201ENST00000580971 93 ntBASIC17.55■□□□□ 0.4
PTPN4P29074 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 AL121672.3-201ENST00000608644 468 ntBASIC17.55■□□□□ 0.4
PTPN4P29074 AL691432.3-201ENST00000621860 400 ntBASIC17.55■□□□□ 0.4
PTPN4P29074 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC17.55■□□□□ 0.4
PTPN4P29074 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
PTPN4P29074 ZNF296-201ENST00000303809 1744 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 SPIN3-224ENST00000639583 2245 ntTSL 5 BASIC17.55■□□□□ 0.4
PTPN4P29074 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
PTPN4P29074 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 HLA-F-217ENST00000334668 1283 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
PTPN4P29074 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.54■□□□□ 0.4
PTPN4P29074 HLA-F-220ENST00000434407 884 ntBASIC17.54■□□□□ 0.4
PTPN4P29074 TPM4P1-201ENST00000436100 807 ntBASIC17.54■□□□□ 0.4
PTPN4P29074 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC17.54■□□□□ 0.4
PTPN4P29074 IGFLR1-209ENST00000592537 1195 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 AC092329.2-201ENST00000598402 547 ntBASIC17.54■□□□□ 0.4
PTPN4P29074 SPEG-225ENST00000617028 815 ntTSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 AC079602.3-201ENST00000623931 403 ntBASIC17.54■□□□□ 0.4
PTPN4P29074 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
PTPN4P29074 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 KRT8P7-201ENST00000533003 1432 ntBASIC17.54■□□□□ 0.4
PTPN4P29074 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.54■□□□□ 0.4
PTPN4P29074 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
PTPN4P29074 UBR3-203ENST00000418381 7951 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
PTPN4P29074 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN4P29074 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 TSPYL5-201ENST00000322128 4491 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
PTPN4P29074 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC17.53■□□□□ 0.4
PTPN4P29074 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
PTPN4P29074 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
PTPN4P29074 MIR3652-201ENST00000579335 131 ntBASIC17.53■□□□□ 0.4
PTPN4P29074 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC17.53■□□□□ 0.4
PTPN4P29074 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
PTPN4P29074 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.4 ms