Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH3P22223 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDH3P22223 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDH3P22223 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH3P22223 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH3P22223 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH3P22223 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
CDH3P22223 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.13■□□□□ 0.33
CDH3P22223 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
CDH3P22223 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
CDH3P22223 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC17.13■□□□□ 0.33
CDH3P22223 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 PYCR2-208ENST00000612039 1549 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH3P22223 PYCR2-209ENST00000612651 1538 ntTSL 5 BASIC17.12■□□□□ 0.33
CDH3P22223 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 FUOM-202ENST00000368551 628 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH3P22223 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH3P22223 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.12■□□□□ 0.33
CDH3P22223 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC17.12■□□□□ 0.33
CDH3P22223 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDH3P22223 AC097374.2-201ENST00000618617 1306 ntBASIC17.12■□□□□ 0.33
CDH3P22223 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
CDH3P22223 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
CDH3P22223 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
CDH3P22223 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDH3P22223 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 PDLIM7-203ENST00000359895 1567 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC17.11■□□□□ 0.33
CDH3P22223 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDH3P22223 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 TYMS-202ENST00000323250 693 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 FAM220CP-201ENST00000395253 831 ntBASIC17.11■□□□□ 0.33
CDH3P22223 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 AC007967.3-201ENST00000434308 558 ntBASIC17.11■□□□□ 0.33
CDH3P22223 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.11■□□□□ 0.33
CDH3P22223 AF238378.1-201ENST00000526806 358 ntBASIC17.11■□□□□ 0.33
CDH3P22223 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 SULT1A1-204ENST00000395609 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 KRT8P10-201ENST00000450021 1447 ntBASIC17.11■□□□□ 0.33
CDH3P22223 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
CDH3P22223 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
CDH3P22223 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
CDH3P22223 AL162727.3-201ENST00000635661 2787 ntBASIC17.11■□□□□ 0.33
CDH3P22223 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
CDH3P22223 COL4A2-201ENST00000360467 6281 ntAPPRIS P1 TSL 5 BASIC17.1■□□□□ 0.33
CDH3P22223 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 PLEKHG4-205ENST00000450733 4480 ntAPPRIS ALT2 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 CD40-202ENST00000372285 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
CDH3P22223 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.1■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms