Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.61■□□□□ 0.25
SDC1P18827 FXN-203ENST00000396366 922 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC16.61■□□□□ 0.25
SDC1P18827 AC103564.2-201ENST00000432853 1299 ntBASIC16.61■□□□□ 0.25
SDC1P18827 PRKCB-209ENST00000498058 480 ntTSL 3 BASIC16.61■□□□□ 0.25
SDC1P18827 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 AL121956.5-201ENST00000625261 221 ntBASIC16.61■□□□□ 0.25
SDC1P18827 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 SPAST-202ENST00000345662 5116 ntAPPRIS ALT1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 GLYCTK-201ENST00000305690 1371 ntTSL 5 BASIC16.61■□□□□ 0.25
SDC1P18827 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
SDC1P18827 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
SDC1P18827 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.61■□□□□ 0.25
SDC1P18827 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC16.61■□□□□ 0.25
SDC1P18827 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 AC005915.1-201ENST00000624912 2018 ntBASIC16.6■□□□□ 0.25
SDC1P18827 INPP5J-207ENST00000405300 2515 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 UGP2-202ENST00000394417 2136 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 GOSR2-202ENST00000393456 788 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 SSR4P1-202ENST00000429427 967 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC1P18827 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 AC111152.3-201ENST00000569699 673 ntBASIC16.6■□□□□ 0.25
SDC1P18827 STK25P1-201ENST00000585406 838 ntBASIC16.6■□□□□ 0.25
SDC1P18827 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC16.6■□□□□ 0.25
SDC1P18827 BCL2L12-210ENST00000611631 1259 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 KCNE1B-204ENST00000623803 811 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 TBC1D9B-220ENST00000630103 303 ntTSL 5 BASIC16.6■□□□□ 0.25
SDC1P18827 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 AC005332.1-201ENST00000577698 1310 ntBASIC16.6■□□□□ 0.25
SDC1P18827 LYPLAL1-202ENST00000366928 1898 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 HGS-201ENST00000329138 2970 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
SDC1P18827 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 SLC44A3-207ENST00000529450 2045 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 CHID1-203ENST00000436108 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.6■□□□□ 0.25
SDC1P18827 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
SDC1P18827 AC105020.1-201ENST00000435356 2205 ntBASIC16.6■□□□□ 0.25
SDC1P18827 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 ARHGAP26-201ENST00000274498 6862 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 RABEP1-202ENST00000537505 5365 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 ENSA-206ENST00000361631 725 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC1P18827 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC1P18827 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
SDC1P18827 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC16.59■□□□□ 0.25
SDC1P18827 AP005901.3-202ENST00000581653 237 ntBASIC16.59■□□□□ 0.25
SDC1P18827 NTF6B-201ENST00000591913 560 ntBASIC16.59■□□□□ 0.25
SDC1P18827 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 F11R-202ENST00000368026 4835 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.59■□□□□ 0.25
SDC1P18827 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC16.59■□□□□ 0.25
SDC1P18827 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
SDC1P18827 AL353593.2-201ENST00000602529 1483 ntBASIC16.59■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms