Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 NKAPP1-205ENST00000585790 367 ntBASIC15.84■□□□□ 0.13
HOXD4P09016 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXD4P09016 AL049840.3-201ENST00000602669 611 ntBASIC15.84■□□□□ 0.13
HOXD4P09016 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXD4P09016 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXD4P09016 AC116407.3-201ENST00000623905 1129 ntBASIC15.84■□□□□ 0.13
HOXD4P09016 SMIM11B-207ENST00000624758 1074 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HOXD4P09016 AC064853.6-201ENST00000642029 303 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HOXD4P09016 ARPC4-201ENST00000397261 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HOXD4P09016 CACNA1A-247ENST00000637769 8648 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.84■□□□□ 0.13
HOXD4P09016 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 CHRNG-201ENST00000389492 1398 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC15.84■□□□□ 0.13
HOXD4P09016 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC15.84■□□□□ 0.13
HOXD4P09016 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
HOXD4P09016 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HOXD4P09016 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXD4P09016 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC15.83■□□□□ 0.13
HOXD4P09016 DRC7-201ENST00000336825 2680 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
HOXD4P09016 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
HOXD4P09016 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXD4P09016 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HOXD4P09016 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HOXD4P09016 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
HOXD4P09016 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
HOXD4P09016 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
HOXD4P09016 ZNF114-206ENST00000600687 1742 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.13
HOXD4P09016 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC15.83■□□□□ 0.13
HOXD4P09016 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.83■□□□□ 0.12
HOXD4P09016 HNRNPDP1-201ENST00000439535 754 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXD4P09016 PON3-205ENST00000451904 1053 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXD4P09016 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXD4P09016 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HOXD4P09016 CD63-204ENST00000546939 779 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXD4P09016 AC025259.3-201ENST00000564531 542 ntTSL 3 BASIC15.83■□□□□ 0.12
HOXD4P09016 AC145285.3-201ENST00000564603 959 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXD4P09016 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXD4P09016 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 MTDHP4-201ENST00000600287 670 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 SLC26A1-205ENST00000622731 1057 ntTSL 5 BASIC15.83■□□□□ 0.12
HOXD4P09016 AC008735.5-201ENST00000623544 497 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HOXD4P09016 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC15.83■□□□□ 0.12
HOXD4P09016 PARD3B-206ENST00000462231 2968 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 PMPCAP1-201ENST00000508114 1576 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 TPD52L1-213ENST00000534000 2356 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HOXD4P09016 AC079776.2-201ENST00000641154 1609 ntBASIC15.83■□□□□ 0.12
HOXD4P09016 VRK3-225ENST00000601912 1668 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HOXD4P09016 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HOXD4P09016 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXD4P09016 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 PHGDH-209ENST00000641074 1780 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HOXD4P09016 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC15.82■□□□□ 0.12
HOXD4P09016 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HOXD4P09016 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
HOXD4P09016 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
HOXD4P09016 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXD4P09016 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXD4P09016 OTOS-202ENST00000391989 645 ntAPPRIS P1 TSL 3 BASIC15.82■□□□□ 0.12
HOXD4P09016 MIR940-201ENST00000401276 94 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 LAGE3P1-201ENST00000425356 484 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 AC092183.1-201ENST00000469884 875 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXD4P09016 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXD4P09016 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC15.82■□□□□ 0.12
HOXD4P09016 AC106782.2-201ENST00000563252 992 ntTSL 3 BASIC15.82■□□□□ 0.12
HOXD4P09016 NUBP2-214ENST00000568706 913 ntTSL 2 BASIC15.82■□□□□ 0.12
HOXD4P09016 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.82■□□□□ 0.12
HOXD4P09016 FBF1-204ENST00000586631 621 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
HOXD4P09016 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HOXD4P09016 AD001527.2-201ENST00000622994 785 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 AC073592.4-201ENST00000623827 446 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 PGM5P2-202ENST00000637225 1043 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 AL022326.1-202ENST00000641533 845 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 AC107918.4-202ENST00000641623 219 ntBASIC15.82■□□□□ 0.12
HOXD4P09016 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC15.82■□□□□ 0.12
HOXD4P09016 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms