Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 FCGRT-201ENST00000221466 1798 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 LGMN-216ENST00000557434 1797 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC17.7■□□□□ 0.42
HOXC11O43248 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 APBB1-224ENST00000621678 1907 ntTSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
HOXC11O43248 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
HOXC11O43248 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 PC-214ENST00000628663 1470 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 FAM13C-204ENST00000468840 2110 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HOXC11O43248 LINC00304-203ENST00000565008 1864 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HOXC11O43248 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.69■□□□□ 0.42
HOXC11O43248 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 AC211486.1-202ENST00000416371 468 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 ALG1L5P-201ENST00000482043 771 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 AC211476.1-201ENST00000503899 468 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXC11O43248 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC17.69■□□□□ 0.42
HOXC11O43248 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 AC004877.2-201ENST00000623941 599 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC17.69■□□□□ 0.42
HOXC11O43248 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXC11O43248 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
HOXC11O43248 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 AL354751.1-201ENST00000412768 1863 ntBASIC17.69■□□□□ 0.42
HOXC11O43248 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
HOXC11O43248 EMX2-203ENST00000553456 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC17.69■□□□□ 0.42
HOXC11O43248 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
HOXC11O43248 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 BIN1-208ENST00000376113 1832 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXC11O43248 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 RPS8P6-201ENST00000426177 609 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 MKNK2P1-201ENST00000437526 628 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 PAWRP1-201ENST00000451083 565 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 AL669831.5-202ENST00000457084 566 ntTSL 4 BASIC17.68■□□□□ 0.42
HOXC11O43248 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC11O43248 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXC11O43248 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
HOXC11O43248 KRT19P2-202ENST00000557173 1012 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXC11O43248 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.68■□□□□ 0.42
HOXC11O43248 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC17.68■□□□□ 0.42
HOXC11O43248 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC11O43248 AC006116.8-202ENST00000587620 1550 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC11O43248 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.68■□□□□ 0.42
HOXC11O43248 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 ZDHHC23-201ENST00000330212 3778 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC17.68■□□□□ 0.42
HOXC11O43248 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 BCAR1-209ENST00000546196 1340 ntBASIC17.68■□□□□ 0.42
HOXC11O43248 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.68■□□□□ 0.42
HOXC11O43248 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
HOXC11O43248 PLTP-202ENST00000372420 1530 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
HOXC11O43248 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
HOXC11O43248 HTR5BP-201ENST00000430851 1154 ntBASIC17.67■□□□□ 0.42
HOXC11O43248 DNAJB3-202ENST00000449667 1266 ntBASIC17.67■□□□□ 0.42
HOXC11O43248 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 FCHSD1-204ENST00000519800 802 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC17.67■□□□□ 0.42
HOXC11O43248 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC17.67■□□□□ 0.42
HOXC11O43248 MIR4469-201ENST00000583919 79 ntBASIC17.67■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms