Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 STRN4-204ENST00000539396 2608 ntTSL 2 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.15■□□□□ 0.34
PCDHB3Q9Y5E6 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.14■□□□□ 0.34
PCDHB3Q9Y5E6 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.34
PCDHB3Q9Y5E6 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.34
PCDHB3Q9Y5E6 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 LINC00602-201ENST00000629776 2065 ntBASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 UVSSA-209ENST00000512728 1668 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 AP001094.4-201ENST00000579008 2176 ntBASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 CD1E-209ENST00000368164 869 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 RAB24-204ENST00000393611 1236 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 IGHV3OR16-7-201ENST00000604106 360 ntBASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 REXO1L6P-202ENST00000619970 1078 ntBASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 ISG15-203ENST00000624697 788 ntAPPRIS ALT2 TSL 3 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 GABRB2-206ENST00000520240 2030 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 AQP8-201ENST00000219660 1359 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC17.14■□□□□ 0.33
PCDHB3Q9Y5E6 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 PSRC1-203ENST00000369907 1717 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 JKAMP-215ENST00000616435 2338 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 RSPH14-201ENST00000216036 1291 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 PRSS38-201ENST00000366757 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 CLDN7-202ENST00000397317 1228 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 MTCL1P1-201ENST00000446207 792 ntBASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 AKR1B10P2-201ENST00000577332 927 ntBASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 AC114341.1-201ENST00000618070 349 ntBASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 VPS51-217ENST00000639871 243 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 OR6D1P-202ENST00000641007 5290 ntBASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
PCDHB3Q9Y5E6 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 MAPK8IP3-201ENST00000250894 5661 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 EIF4E1B-201ENST00000318682 1974 ntAPPRIS P1 TSL 5 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 MRPS24-203ENST00000418740 743 ntTSL 2 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC17.12■□□□□ 0.33
PCDHB3Q9Y5E6 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms