Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 AC008610.1-201ENST00000504573 393 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SPAG7-207ENST00000575142 1094 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 AC069148.1-201ENST00000608741 768 ntBASIC14.15□□□□□ -0.14
FOXA2Q9Y261 AC005906.2-206ENST00000638180 1029 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SWAP70-202ENST00000447399 3538 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 AC011676.5-201ENST00000624864 2660 ntBASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SAMD11-202ENST00000342066 2551 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SAMD11-217ENST00000622503 2557 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 MCTP2-205ENST00000543482 1422 ntTSL 2 BASIC14.15□□□□□ -0.14
FOXA2Q9Y261 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
FOXA2Q9Y261 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ANHX-201ENST00000419717 1765 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 PARP6-220ENST00000569795 2855 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 SCP2-202ENST00000371513 2003 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 BET1L-202ENST00000332865 533 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ROMO1-204ENST00000374078 498 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 LBX1-AS1-204ENST00000456391 421 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 AL365255.1-201ENST00000637702 847 ntTSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 VPS72-207ENST00000640458 689 ntTSL 5 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 AC084018.2-201ENST00000613093 2607 ntBASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC14.14□□□□□ -0.15
FOXA2Q9Y261 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 DTX3-204ENST00000548804 2067 ntAPPRIS P3 TSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 NOMO2-211ENST00000621364 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 COPS8-203ENST00000409334 794 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 CHCHD2P8-201ENST00000429873 447 ntBASIC14.13□□□□□ -0.15
FOXA2Q9Y261 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 TSSC2-201ENST00000450217 709 ntBASIC14.13□□□□□ -0.15
FOXA2Q9Y261 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 NBPF14-202ENST00000593495 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 IGHV3-41-201ENST00000613121 348 ntBASIC14.13□□□□□ -0.15
FOXA2Q9Y261 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 AC116353.5-201ENST00000638148 1699 ntBASIC14.13□□□□□ -0.15
FOXA2Q9Y261 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
FOXA2Q9Y261 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms