Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 DCAF8-218ENST00000610139 1607 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
SHROOM4Q9ULL8 PTGER3-201ENST00000306666 2333 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 SNX8-201ENST00000222990 4727 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 GRAP-202ENST00000395635 834 ntTSL 2 BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 HLA-DRB6-201ENST00000411500 1235 ntBASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 AC023141.13-201ENST00000604991 943 ntBASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC32.95■■■□□ 2.87
SHROOM4Q9ULL8 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC32.95■■■□□ 2.86
SHROOM4Q9ULL8 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
SHROOM4Q9ULL8 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC32.95■■■□□ 2.86
SHROOM4Q9ULL8 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 BPHL-203ENST00000380379 1928 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 AC007064.4-201ENST00000637740 555 ntBASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 STK11-201ENST00000326873 2611 ntAPPRIS P2 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 DOK7-201ENST00000340083 2562 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 DOK7-203ENST00000507039 2551 ntTSL 2 BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC32.94■■■□□ 2.86
SHROOM4Q9ULL8 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 VMA21-202ENST00000370361 693 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 GSAP-205ENST00000430584 600 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 REXO1L11P-201ENST00000620964 1927 ntBASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 KRT6A-201ENST00000330722 2310 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 LINC00574-201ENST00000420557 2318 ntTSL 2 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 AC009336.1-201ENST00000608941 1553 ntBASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 ORC5-201ENST00000297431 1958 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 HAPLN3-204ENST00000562889 1547 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 STK19B-204ENST00000512515 211 ntBASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 GGTLC5P-201ENST00000617623 998 ntBASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 PGLYRP1-201ENST00000008938 720 ntAPPRIS P1 TSL 1 (best) BASIC32.93■■■□□ 2.86
SHROOM4Q9ULL8 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 ASTL-201ENST00000342380 1296 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 BAG1-202ENST00000379704 1128 ntAPPRIS ALT2 TSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 AC025580.3-201ENST00000617932 1424 ntBASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC32.92■■■□□ 2.86
SHROOM4Q9ULL8 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 ANKRD40-201ENST00000285243 4184 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 FLG-AS1-204ENST00000420707 906 ntTSL 5 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 AC073283.1-201ENST00000421759 860 ntTSL 3 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 NMU-203ENST00000507338 658 ntTSL 3 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 DUX4L17-201ENST00000557360 1267 ntBASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 RN7SL204P-201ENST00000582831 262 ntBASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 AC087645.2-201ENST00000586321 799 ntTSL 3 BASIC32.91■■■□□ 2.86
SHROOM4Q9ULL8 MED16-214ENST00000617672 554 ntTSL 5 BASIC32.91■■■□□ 2.86
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms