Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 PCDH8P1-201ENST00000428983 2773 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 STX3-203ENST00000529177 1571 ntTSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 AMFR-201ENST00000290649 3600 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 AC046158.3-201ENST00000624947 2558 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 CLK2-202ENST00000361168 1934 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 TMEM53-201ENST00000372235 890 ntTSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 MIR662-201ENST00000384847 95 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 STARP1-201ENST00000397973 869 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 FAM8A6P-201ENST00000407496 1135 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 MIR4497-201ENST00000583208 89 ntBASIC17.24■□□□□ 0.35
MKS1Q9NXB0 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 STXBP2-201ENST00000221283 1876 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
MKS1Q9NXB0 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 KRT18P22-201ENST00000402024 1347 ntBASIC17.23■□□□□ 0.35
MKS1Q9NXB0 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 AL031432.5-201ENST00000641059 760 ntBASIC17.23■□□□□ 0.35
MKS1Q9NXB0 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 LINC01568-207ENST00000641790 1380 ntBASIC17.23■□□□□ 0.35
MKS1Q9NXB0 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 FZR1-202ENST00000395095 1491 ntAPPRIS ALT1 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 ST8SIA4-202ENST00000451528 1794 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
MKS1Q9NXB0 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 BICRA-201ENST00000396720 5739 ntAPPRIS P2 TSL 5 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 FMR1-202ENST00000334557 1295 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 CD70-202ENST00000423145 881 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 SAPCD2P2-201ENST00000431719 1174 ntBASIC17.22■□□□□ 0.35
MKS1Q9NXB0 ST6GALNAC4P1-201ENST00000435385 499 ntBASIC17.22■□□□□ 0.35
MKS1Q9NXB0 TMA16-209ENST00000513272 803 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 AL441883.1-201ENST00000566170 1045 ntBASIC17.22■□□□□ 0.35
MKS1Q9NXB0 AC109462.3-201ENST00000573934 613 ntBASIC17.22■□□□□ 0.35
MKS1Q9NXB0 FCGRT-210ENST00000596975 1054 ntTSL 5 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 DMRTC2-204ENST00000596827 1675 ntTSL 2 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC17.22■□□□□ 0.35
MKS1Q9NXB0 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
MKS1Q9NXB0 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.21■□□□□ 0.35
MKS1Q9NXB0 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 28.6 ms