Protein–RNA interactions for Protein: Q92889

ERCC4, DNA repair endonuclease XPF, humanhuman

Predicted RBP Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ERCC4Q92889 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC4Q92889 STARP1-201ENST00000397973 869 ntBASIC19.83■□□□□ 0.77
ERCC4Q92889 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC19.83■□□□□ 0.77
ERCC4Q92889 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC4Q92889 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC4Q92889 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC19.83■□□□□ 0.77
ERCC4Q92889 VENTXP5-201ENST00000523979 775 ntBASIC19.83■□□□□ 0.77
ERCC4Q92889 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC19.83■□□□□ 0.77
ERCC4Q92889 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC19.83■□□□□ 0.77
ERCC4Q92889 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
ERCC4Q92889 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC19.83■□□□□ 0.77
ERCC4Q92889 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
ERCC4Q92889 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 AC018695.7-201ENST00000624587 2492 ntBASIC19.83■□□□□ 0.76
ERCC4Q92889 SUSD4-202ENST00000343846 3480 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
ERCC4Q92889 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC19.83■□□□□ 0.76
ERCC4Q92889 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
ERCC4Q92889 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 TRIM27-201ENST00000377194 2686 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 FLJ38576-201ENST00000623820 2459 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
ERCC4Q92889 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 AL021453.1-201ENST00000333487 2989 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 LGALS8-AS1-201ENST00000487567 1457 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 IGHGP-201ENST00000390555 1178 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 KRT18P57-201ENST00000443599 1254 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC19.82■□□□□ 0.76
ERCC4Q92889 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC19.82■□□□□ 0.76
ERCC4Q92889 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC19.82■□□□□ 0.76
ERCC4Q92889 AC012306.2-201ENST00000609350 630 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 ADM-208ENST00000534464 1640 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 AL121761.2-201ENST00000598007 1648 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 AC073508.3-201ENST00000619697 1419 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC19.82■□□□□ 0.76
ERCC4Q92889 AL353692.3-201ENST00000407031 1396 ntBASIC19.82■□□□□ 0.76
ERCC4Q92889 KCNH1-214ENST00000640566 1365 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 DCST1-202ENST00000368419 2207 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
ERCC4Q92889 SYNGR2-206ENST00000589711 2041 ntTSL 5 BASIC19.81■□□□□ 0.76
ERCC4Q92889 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC19.81■□□□□ 0.76
ERCC4Q92889 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC19.81■□□□□ 0.76
ERCC4Q92889 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 AC068472.1-201ENST00000474589 881 ntBASIC19.81■□□□□ 0.76
ERCC4Q92889 AP003733.1-201ENST00000491725 852 ntBASIC19.81■□□□□ 0.76
ERCC4Q92889 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.81■□□□□ 0.76
ERCC4Q92889 PPOX-214ENST00000535223 664 ntTSL 3 BASIC19.81■□□□□ 0.76
ERCC4Q92889 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC19.81■□□□□ 0.76
ERCC4Q92889 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC19.81■□□□□ 0.76
ERCC4Q92889 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
ERCC4Q92889 DFFB-212ENST00000625756 649 ntTSL 5 BASIC19.81■□□□□ 0.76
ERCC4Q92889 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC19.81■□□□□ 0.76
ERCC4Q92889 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ERCC4Q92889 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
ERCC4Q92889 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
ERCC4Q92889 PCDHA14-201ENST00000506751 2298 ntBASIC19.81■□□□□ 0.76
ERCC4Q92889 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 GRK6-202ENST00000355958 1789 ntAPPRIS ALT1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC19.8■□□□□ 0.76
ERCC4Q92889 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC19.8■□□□□ 0.76
ERCC4Q92889 SVOPL-204ENST00000436657 1420 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
ERCC4Q92889 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC19.8■□□□□ 0.76
ERCC4Q92889 PARK7-201ENST00000338639 949 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms