Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PPM1B-201ENST00000282412 2606 ntAPPRIS P4 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
SLC44A3Q8N4M1 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 AC015922.1-201ENST00000421102 1152 ntBASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 KRT8P48-201ENST00000515599 1220 ntBASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 DFFA-201ENST00000377036 1403 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 SREK1-216ENST00000612404 2128 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC17.78■□□□□ 0.44
SLC44A3Q8N4M1 PRRT2-216ENST00000637403 2033 ntTSL 5 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 EWSR1-208ENST00000414183 2189 ntAPPRIS P4 TSL 2 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 HNRNPM-201ENST00000325495 2494 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 CRYGN-201ENST00000337323 754 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 SNHG5-201ENST00000369605 1032 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 NABP1-203ENST00000409510 843 ntTSL 5 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AL355306.1-201ENST00000415580 579 ntBASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AC055876.3-201ENST00000431496 288 ntBASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 VPS29-207ENST00000549970 818 ntTSL 3 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 LIM2-202ENST00000596399 861 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AC138649.4-201ENST00000612222 287 ntBASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
SLC44A3Q8N4M1 NKIRAS1-207ENST00000437230 1898 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
SLC44A3Q8N4M1 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 SHOX-204ENST00000554971 1902 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 CLN6-202ENST00000538696 1343 ntTSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 AC063926.2-201ENST00000623766 1308 ntBASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 MRPL53-201ENST00000258105 1162 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.76■□□□□ 0.43
SLC44A3Q8N4M1 SPDYE11-202ENST00000450699 704 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms