Protein–RNA interactions for Protein: Q8N3C7

CLIP4, CAP-Gly domain-containing linker protein 4, humanhuman

Predictions only

Length 705 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4Q8N3C7 CCDC120-206ENST00000603986 2379 ntAPPRIS ALT2 TSL 2 BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 DIXDC1-208ENST00000615255 4825 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 AP001094.4-201ENST00000579008 2176 ntBASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC16.43■□□□□ 0.22
CLIP4Q8N3C7 GGT2-202ENST00000405188 1845 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 MAPK14-201ENST00000229794 3779 ntAPPRIS P5 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 DYRK1B-203ENST00000430012 2007 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 IGHGP-201ENST00000390555 1178 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 PAX3-208ENST00000409828 1254 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AK4P3-201ENST00000418260 669 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AC104076.2-201ENST00000448912 469 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AP003733.1-201ENST00000491725 852 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AC004080.5-201ENST00000498652 368 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 ZNF444P1-201ENST00000559497 298 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 HYMAI.1-201ENST00000620949 238 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 AC009154.2-201ENST00000621177 724 ntBASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 BOC-212ENST00000485230 2173 ntTSL 2 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 TMED3-201ENST00000299705 1475 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC16.42■□□□□ 0.22
CLIP4Q8N3C7 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 AC103702.1-201ENST00000548801 2630 ntBASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 GBA2-202ENST00000378094 3757 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 LTV1-201ENST00000367576 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 OARD1-201ENST00000373154 1129 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 AC112907.2-201ENST00000448639 330 ntBASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 HOMER2P1-201ENST00000455653 964 ntBASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 RBM42-202ENST00000586618 771 ntTSL 3 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 LINC01023-201ENST00000606054 436 ntBASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 FGF14-AS2-201ENST00000606448 1074 ntBASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 SPEG-225ENST00000617028 815 ntTSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 CHST8-201ENST00000262622 2479 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 VPS37D-202ENST00000451519 1303 ntTSL 5 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
CLIP4Q8N3C7 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 RAB1A-203ENST00000409784 2447 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CLIP4Q8N3C7 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms