Protein–RNA interactions for Protein: Q68DV7

RNF43, E3 ubiquitin-protein ligase RNF43, humanhuman

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF43Q68DV7 CTNS-203ENST00000399306 803 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 CT47A11-201ENST00000457020 1294 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 AC091133.2-201ENST00000505903 428 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 AF238378.1-201ENST00000526806 358 ntBASIC18.34■□□□□ 0.53
RNF43Q68DV7 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 HDAC10-222ENST00000626012 2607 ntTSL 5 BASIC18.34■□□□□ 0.53
RNF43Q68DV7 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RNF43Q68DV7 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF43Q68DV7 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC18.33■□□□□ 0.53
RNF43Q68DV7 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.33■□□□□ 0.53
RNF43Q68DV7 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC18.33■□□□□ 0.53
RNF43Q68DV7 AVPR1A-201ENST00000299178 5963 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF43Q68DV7 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.53
RNF43Q68DV7 CXXC1-202ENST00000412036 2280 ntAPPRIS ALT1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF43Q68DV7 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC18.33■□□□□ 0.53
RNF43Q68DV7 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.53
RNF43Q68DV7 SIGIRR-203ENST00000431843 1720 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 NF2-208ENST00000403435 2568 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 POLD2P1-201ENST00000511220 997 ntBASIC18.33■□□□□ 0.52
RNF43Q68DV7 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 MRPL21-208ENST00000567045 932 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 APBB1-215ENST00000608394 2128 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 APBB1-222ENST00000610474 2147 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 AC005632.4-201ENST00000613759 431 ntTSL 3 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 LUC7L-202ENST00000337351 2097 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 TRABD2A-202ENST00000409133 1554 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 SH3BP5-203ENST00000408919 1880 ntTSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 RBCK1-215ENST00000640614 2599 ntTSL 5 BASIC18.33■□□□□ 0.52
RNF43Q68DV7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
RNF43Q68DV7 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 WDR59-202ENST00000536050 1752 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 RAB11FIP2-201ENST00000355624 6061 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 CLDN14-203ENST00000399136 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PTRHD1-201ENST00000328379 1105 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 FAM197Y8-203ENST00000450145 560 ntBASIC18.32■□□□□ 0.52
RNF43Q68DV7 NDUFB2-209ENST00000472695 503 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 SMN1-203ENST00000503079 1219 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 HEXA-210ENST00000567213 1000 ntTSL 3 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TST-204ENST00000622841 1105 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TP73-AS1-207ENST00000624167 988 ntBASIC18.32■□□□□ 0.52
RNF43Q68DV7 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PTP4A3-201ENST00000329397 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PACSIN2-205ENST00000407585 3080 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 ZRSR2-201ENST00000307771 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 ARHGEF28-204ENST00000437974 5792 ntAPPRIS P3 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 SYTL3-201ENST00000297239 2292 ntAPPRIS ALT1 TSL 1 (best) BASIC18.32■□□□□ 0.52
RNF43Q68DV7 SLC12A9-215ENST00000540482 2269 ntTSL 2 BASIC18.32■□□□□ 0.52
RNF43Q68DV7 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 AC022211.2-201ENST00000585075 2527 ntBASIC18.31■□□□□ 0.52
RNF43Q68DV7 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC18.31■□□□□ 0.52
RNF43Q68DV7 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
RNF43Q68DV7 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.31■□□□□ 0.52
RNF43Q68DV7 DCHS2-201ENST00000339452 5064 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
RNF43Q68DV7 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms