Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 CENPM-205ENST00000404067 905 ntTSL 3 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 AC026150.2-201ENST00000564693 1156 ntBASIC21.8■■□□□ 1.08
RC3H1Q5TC82 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 AC012645.4-201ENST00000610691 1061 ntBASIC21.8■■□□□ 1.08
RC3H1Q5TC82 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 VAV1-204ENST00000596764 2775 ntTSL 2 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC21.8■■□□□ 1.08
RC3H1Q5TC82 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 FO538757.1-201ENST00000623083 1397 ntBASIC21.79■■□□□ 1.08
RC3H1Q5TC82 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 SPDYE14P-201ENST00000442619 822 ntBASIC21.79■■□□□ 1.08
RC3H1Q5TC82 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 C8orf46-213ENST00000521495 557 ntTSL 4 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 BAD-207ENST00000544785 525 ntTSL 3 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
RC3H1Q5TC82 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 AC008677.1-201ENST00000519230 1561 ntBASIC21.78■■□□□ 1.08
RC3H1Q5TC82 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 CKLF-203ENST00000351137 508 ntAPPRIS ALT2 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 HNRNPA1P40-201ENST00000426371 1278 ntBASIC21.78■■□□□ 1.08
RC3H1Q5TC82 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 FXYD1-202ENST00000455515 594 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 AC125807.1-201ENST00000483097 614 ntBASIC21.78■■□□□ 1.08
RC3H1Q5TC82 AL009183.1-201ENST00000603760 355 ntBASIC21.78■■□□□ 1.08
RC3H1Q5TC82 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
RC3H1Q5TC82 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 MYO19-225ENST00000621344 1640 ntTSL 2 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 WWOX-214ENST00000566780 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 C10orf35-201ENST00000373279 1065 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 AC005412.3-201ENST00000580309 715 ntBASIC21.77■■□□□ 1.08
RC3H1Q5TC82 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 SSH2-211ENST00000590153 570 ntTSL 4 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 AL158211.3-201ENST00000607385 239 ntBASIC21.77■■□□□ 1.08
RC3H1Q5TC82 AC008761.3-201ENST00000624803 892 ntBASIC21.77■■□□□ 1.08
RC3H1Q5TC82 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
RC3H1Q5TC82 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC21.77■■□□□ 1.07
RC3H1Q5TC82 DUOXA1-202ENST00000430224 1317 ntTSL 1 (best) BASIC21.77■■□□□ 1.07
RC3H1Q5TC82 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.07
RC3H1Q5TC82 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 AC133561.2-201ENST00000380145 1802 ntTSL 2 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SPDYE7P-202ENST00000420373 878 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 TREML5P-201ENST00000421694 576 ntBASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC21.76■■□□□ 1.07
RC3H1Q5TC82 GAPDHP21-201ENST00000450301 1010 ntBASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms