Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 SEC22C-202ENST00000273156 1608 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 POLR2M-206ENST00000494490 1648 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 AL356309.3-201ENST00000624132 1934 ntBASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 MIR1233-2-201ENST00000408138 82 ntBASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 MIR1233-1-201ENST00000408722 82 ntBASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 COX10-202ENST00000429152 875 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 AC112698.1-201ENST00000510299 916 ntBASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 SDCBP2-204ENST00000381812 1550 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 HARS-201ENST00000307633 1780 ntTSL 2 BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 SEPHS1-201ENST00000327347 3273 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
CCDC144BQ3MJ40 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 DNM2-201ENST00000355667 3541 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 SIPA1-209ENST00000534313 3521 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 AL138828.1-202ENST00000576956 1881 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 BX842568.4-201ENST00000421222 227 ntBASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 ZNF655-215ENST00000440391 1198 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 TSPY3-202ENST00000440483 414 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 AC145285.3-201ENST00000564603 959 ntBASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 PNMT-203ENST00000581428 677 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 PSMA6-216ENST00000627895 484 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
CCDC144BQ3MJ40 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC144BQ3MJ40 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC144BQ3MJ40 AC104109.2-201ENST00000602919 1418 ntBASIC20.27■□□□□ 0.83
CCDC144BQ3MJ40 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC144BQ3MJ40 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
CCDC144BQ3MJ40 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 IGSF9B-206ENST00000533871 5050 ntAPPRIS P2 TSL 5 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 CD63-204ENST00000546939 779 ntTSL 3 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 AC012640.2-201ENST00000561606 901 ntBASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 CAND2-206ENST00000626378 333 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 ABCC3-202ENST00000427699 1881 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.26■□□□□ 0.83
CCDC144BQ3MJ40 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 CLDND1-204ENST00000394185 2159 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 GGA1-203ENST00000343632 3159 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 HLA-J-201ENST00000462773 1622 ntBASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 WDR13-201ENST00000218056 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 RAB17-203ENST00000409576 466 ntTSL 3 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 OR7E14P-202ENST00000530490 1290 ntBASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 AC025062.2-201ENST00000605477 670 ntBASIC20.25■□□□□ 0.83
CCDC144BQ3MJ40 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms