Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 MORN4-202ENST00000370635 419 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 ALG1L8P-201ENST00000533887 760 ntBASIC18.3■□□□□ 0.52
CHD9Q3L8U1 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
CHD9Q3L8U1 AL135999.2-201ENST00000622438 1686 ntBASIC18.3■□□□□ 0.52
CHD9Q3L8U1 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 AC009477.1-201ENST00000452936 217 ntBASIC18.29■□□□□ 0.52
CHD9Q3L8U1 ACA64.2-201ENST00000459014 129 ntBASIC18.29■□□□□ 0.52
CHD9Q3L8U1 DCTD-213ENST00000510370 794 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 NOP2-211ENST00000540228 668 ntTSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 FAM181A-205ENST00000557719 1072 ntAPPRIS P1 TSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 COQ4-205ENST00000609948 956 ntTSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 SPIN2A-203ENST00000614076 966 ntTSL 3 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 AL645728.2-201ENST00000641974 660 ntBASIC18.29■□□□□ 0.52
CHD9Q3L8U1 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 TMPRSS5-205ENST00000538955 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 KCNC3-203ENST00000477616 3176 ntAPPRIS P2 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 CD55-206ENST00000391921 2433 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.29■□□□□ 0.52
CHD9Q3L8U1 MIR346-201ENST00000362234 95 ntBASIC18.28■□□□□ 0.52
CHD9Q3L8U1 AC009407.1-201ENST00000568958 598 ntBASIC18.28■□□□□ 0.52
CHD9Q3L8U1 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 CROCCP3-202ENST00000420820 1947 ntBASIC18.28■□□□□ 0.52
CHD9Q3L8U1 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 MMP17-203ENST00000535004 719 ntTSL 3 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 MON1B-202ENST00000439557 1759 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC18.28■□□□□ 0.52
CHD9Q3L8U1 SYBU-232ENST00000533171 2498 ntAPPRIS ALT2 TSL 2 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 NCAPH2-203ENST00000395701 2077 ntTSL 2 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 RAI2-203ENST00000415486 2037 ntTSL 2 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 ZGPAT-202ENST00000355969 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.52
CHD9Q3L8U1 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 FAM174A-201ENST00000312637 1356 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 RCAN3-209ENST00000616511 2527 ntTSL 1 (best) BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC18.27■□□□□ 0.51
CHD9Q3L8U1 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 SPSB1-201ENST00000328089 3120 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 CCDC43-201ENST00000315286 2082 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 AP000842.3-202ENST00000569238 1080 ntBASIC18.26■□□□□ 0.51
CHD9Q3L8U1 MIR4453-201ENST00000584019 89 ntBASIC18.26■□□□□ 0.51
CHD9Q3L8U1 PIH1D1-209ENST00000596049 992 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 AL157392.3-207ENST00000601758 744 ntTSL 5 BASIC18.26■□□□□ 0.51
CHD9Q3L8U1 AC009118.2-201ENST00000613275 655 ntBASIC18.26■□□□□ 0.51
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms