Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 EIF5A2-203ENST00000474096 570 ntTSL 4 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 AC002558.1-201ENST00000488906 803 ntBASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 SHBG-211ENST00000574539 938 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 BBC3-201ENST00000300880 1347 ntTSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 CAMK1D-201ENST00000378845 1578 ntAPPRIS ALT2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 NOTCH2NL-201ENST00000362074 1874 ntAPPRIS P2 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 DNM1-202ENST00000372923 3244 ntAPPRIS P3 TSL 1 (best) BASIC17.09■□□□□ 0.33
PTCHD3Q3KNS1 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.08■□□□□ 0.33
PTCHD3Q3KNS1 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 GMPR-201ENST00000259727 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 ESYT3-201ENST00000289135 1356 ntTSL 5 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 IGF2-202ENST00000381392 1005 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 AC122714.2-201ENST00000502787 707 ntBASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 AC009533.2-201ENST00000543664 586 ntBASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 PIP5K1C-205ENST00000589578 2933 ntAPPRIS ALT2 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 AC099398.1-201ENST00000567919 2776 ntBASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 NFATC1-210ENST00000587635 2195 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 VPS37A-201ENST00000324849 4906 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
PTCHD3Q3KNS1 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 TMEM59L-205ENST00000600490 1717 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AC011840.1-202ENST00000436477 1351 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 PRMT2-201ENST00000291705 1011 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AKR1C7P-201ENST00000305623 895 ntBASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 SZT2-202ENST00000372450 1191 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 FAM220CP-201ENST00000395253 831 ntBASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 FDX1P1-201ENST00000449115 551 ntBASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 SMIM4-202ENST00000476842 522 ntTSL 4 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 BMF-207ENST00000559701 630 ntTSL 3 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 AC019129.2-201ENST00000609837 1235 ntBASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
PTCHD3Q3KNS1 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms