Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RFX4Q33E94 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX4Q33E94 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 PNCK-203ENST00000370145 1455 ntTSL 2 BASIC16.28■□□□□ 0.2
RFX4Q33E94 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
RFX4Q33E94 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RFX4Q33E94 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 OPRK1-202ENST00000520287 1602 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 NUDC-201ENST00000321265 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX4Q33E94 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX4Q33E94 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX4Q33E94 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX4Q33E94 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
RFX4Q33E94 NUDT16L1-203ENST00000586252 922 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX4Q33E94 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC16.27■□□□□ 0.2
RFX4Q33E94 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.2
RFX4Q33E94 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
RFX4Q33E94 GRAMD1A-202ENST00000411896 2523 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.2
RFX4Q33E94 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.27■□□□□ 0.2
RFX4Q33E94 PFKP-202ENST00000381075 2769 ntTSL 2 BASIC16.27■□□□□ 0.2
RFX4Q33E94 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 CICP6-201ENST00000457191 2729 ntBASIC16.27■□□□□ 0.19
RFX4Q33E94 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.27■□□□□ 0.19
RFX4Q33E94 MED29-202ENST00000594368 1471 ntTSL 2 BASIC16.27■□□□□ 0.19
RFX4Q33E94 ARL14EP-201ENST00000282032 2430 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC16.27■□□□□ 0.19
RFX4Q33E94 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 ACD-203ENST00000602320 1408 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.19
RFX4Q33E94 LYSMD4-203ENST00000378904 2122 ntBASIC16.27■□□□□ 0.19
RFX4Q33E94 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.27■□□□□ 0.19
RFX4Q33E94 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
RFX4Q33E94 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.27■□□□□ 0.19
RFX4Q33E94 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 BNC1-201ENST00000345382 4610 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 FRS2-206ENST00000549921 1952 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC009947.2-201ENST00000444014 672 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC16.26■□□□□ 0.19
RFX4Q33E94 SNORA78-201ENST00000459373 127 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AL512604.3-201ENST00000569583 964 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 NT5C-210ENST00000582160 860 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AP006294.2-201ENST00000641667 209 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 LINC01311-201ENST00000565162 1445 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC026691.1-201ENST00000602502 2017 ntBASIC16.26■□□□□ 0.19
RFX4Q33E94 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
RFX4Q33E94 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
RFX4Q33E94 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms