Protein–RNA interactions for Protein: Q2NKJ3

CTC1, CST complex subunit CTC1, humanhuman

Predictions only

Length 1,217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTC1Q2NKJ3 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.65■□□□□ 0.58
CTC1Q2NKJ3 BBS5-202ENST00000392663 3107 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
CTC1Q2NKJ3 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
CTC1Q2NKJ3 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.58
CTC1Q2NKJ3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.58
CTC1Q2NKJ3 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTC1Q2NKJ3 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
CTC1Q2NKJ3 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.58
CTC1Q2NKJ3 RELL2-201ENST00000297164 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 GTF2H4-202ENST00000376316 1673 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 RGS3-231ENST00000613049 1726 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 IGLL3P-201ENST00000412472 434 ntBASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 ATP6V0CP3-201ENST00000417255 467 ntBASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 AP000344.2-201ENST00000512987 629 ntBASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 AC004790.2-201ENST00000623588 572 ntBASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
CTC1Q2NKJ3 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 FADS1-204ENST00000433932 1690 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 ARSE-201ENST00000381134 1853 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 MRGPRF-202ENST00000320913 705 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 AC103564.2-201ENST00000432853 1299 ntBASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 NRSN2-AS1-202ENST00000442637 762 ntTSL 3 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 RPS15P9-201ENST00000494093 319 ntBASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 CYB561-217ENST00000582997 877 ntTSL 5 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 AC073592.5-201ENST00000624854 528 ntBASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 PRORSD1P-202ENST00000563365 2154 ntBASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 AC012313.1-201ENST00000593393 3059 ntBASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
CTC1Q2NKJ3 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 METTL21C-201ENST00000267273 1088 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 CA4-201ENST00000300900 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 STOM-202ENST00000347359 870 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 ACTG1P14-201ENST00000446382 1122 ntBASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 CIPC-205ENST00000555437 566 ntTSL 3 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 PRR29-209ENST00000582540 967 ntTSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 NABP2-201ENST00000267023 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC18.62■□□□□ 0.57
CTC1Q2NKJ3 ADM-208ENST00000534464 1640 ntTSL 2 BASIC18.62■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 39.4 ms