Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 NME9-203ENST00000383180 2133 ntTSL 2 BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
SHROOM1Q2M3G4 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 KRT18P28-201ENST00000453838 1332 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 CD276-203ENST00000537340 2439 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 TTC19-201ENST00000261647 3002 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 PSRC1-204ENST00000369909 1742 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 ELL2P1-201ENST00000413990 1906 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 CMTM2-202ENST00000379486 904 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 CEND1P1-201ENST00000451006 455 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AC027612.4-201ENST00000605371 583 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 ACTL9-202ENST00000612068 1252 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AL139327.4-201ENST00000612362 153 ntBASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AC118553.2-203ENST00000639037 2590 ntAPPRIS P5 TSL 5 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.28■□□□□ 0.84
SHROOM1Q2M3G4 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 AL355312.1-201ENST00000407115 2176 ntBASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 ENSA-206ENST00000361631 725 ntTSL 2 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 RNF146-201ENST00000309649 2624 ntAPPRIS P3 TSL 4 BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 ROCK2-202ENST00000315872 8292 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
SHROOM1Q2M3G4 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHROOM1Q2M3G4 FOXS1-201ENST00000375978 1319 ntAPPRIS P1 BASIC20.27■□□□□ 0.83
SHROOM1Q2M3G4 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC20.27■□□□□ 0.83
SHROOM1Q2M3G4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
SHROOM1Q2M3G4 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.83
SHROOM1Q2M3G4 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 FOXP1-210ENST00000484350 1996 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 LYSMD4-203ENST00000378904 2122 ntBASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 GNA12-201ENST00000275364 4378 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 GLIPR1L1-202ENST00000378695 885 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 FAM58CP-201ENST00000435741 640 ntBASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 GGTLC5P-201ENST00000617623 998 ntBASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 AC079781.4-201ENST00000641908 219 ntBASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 FAM86DP-207ENST00000497543 2152 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 NADK-201ENST00000341426 3235 ntAPPRIS P3 TSL 2 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 TBKBP1-204ENST00000622396 2010 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
SHROOM1Q2M3G4 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 AIRN-201ENST00000601203 4374 ntBASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 PAWRP1-201ENST00000451083 565 ntBASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
SHROOM1Q2M3G4 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC20.25■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms