Protein–RNA interactions for Protein: P61968

LMO4, LIM domain transcription factor LMO4, humanhuman

Predictions only

Length 165 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMO4P61968 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC14.28□□□□□ -0.12
LMO4P61968 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMO4P61968 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC14.28□□□□□ -0.12
LMO4P61968 CDH24-205ENST00000554034 2759 ntAPPRIS P1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMO4P61968 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC14.28□□□□□ -0.12
LMO4P61968 RASA4B-201ENST00000306682 2589 ntTSL 1 (best) BASIC14.28□□□□□ -0.12
LMO4P61968 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 SEMA7A-203ENST00000543145 2304 ntTSL 2 BASIC14.27□□□□□ -0.12
LMO4P61968 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.12
LMO4P61968 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC14.27□□□□□ -0.12
LMO4P61968 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC14.27□□□□□ -0.12
LMO4P61968 TCP11-201ENST00000244645 2018 ntAPPRIS P3 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC14.27□□□□□ -0.12
LMO4P61968 GOLGA7-202ENST00000405786 1903 ntTSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC14.27□□□□□ -0.12
LMO4P61968 NOM1-201ENST00000275820 6077 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.12
LMO4P61968 AC025580.3-201ENST00000617932 1424 ntBASIC14.27□□□□□ -0.12
LMO4P61968 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.27□□□□□ -0.13
LMO4P61968 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 GGCT-205ENST00000409436 954 ntTSL 3 BASIC14.27□□□□□ -0.13
LMO4P61968 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC14.27□□□□□ -0.13
LMO4P61968 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.27□□□□□ -0.13
LMO4P61968 CXCL1P1-201ENST00000502804 216 ntBASIC14.27□□□□□ -0.13
LMO4P61968 SMN2-210ENST00000511812 867 ntTSL 2 BASIC14.27□□□□□ -0.13
LMO4P61968 CYB561-216ENST00000582297 897 ntTSL 3 BASIC14.27□□□□□ -0.13
LMO4P61968 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 AC007064.4-201ENST00000637740 555 ntBASIC14.27□□□□□ -0.13
LMO4P61968 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 AGTR1-201ENST00000349243 2356 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 LYSMD4-203ENST00000378904 2122 ntBASIC14.27□□□□□ -0.13
LMO4P61968 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC14.27□□□□□ -0.13
LMO4P61968 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 ADAM15-207ENST00000368413 1901 ntTSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC14.27□□□□□ -0.13
LMO4P61968 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC14.27□□□□□ -0.13
LMO4P61968 WWC3-201ENST00000380861 6647 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 ZNF696-201ENST00000330143 2795 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.27□□□□□ -0.13
LMO4P61968 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 LMNA-207ENST00000368301 2461 ntTSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 FAM185BP-201ENST00000443595 716 ntBASIC14.26□□□□□ -0.13
LMO4P61968 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
LMO4P61968 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC14.26□□□□□ -0.13
LMO4P61968 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC14.26□□□□□ -0.13
LMO4P61968 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC14.26□□□□□ -0.13
LMO4P61968 AC023141.13-201ENST00000604991 943 ntBASIC14.26□□□□□ -0.13
LMO4P61968 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 AL078644.1-201ENST00000609881 752 ntBASIC14.26□□□□□ -0.13
LMO4P61968 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC14.26□□□□□ -0.13
LMO4P61968 LYSMD4-201ENST00000332728 2847 ntTSL 4 BASIC14.26□□□□□ -0.13
LMO4P61968 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
LMO4P61968 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 SERPINE2-201ENST00000258405 2195 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
LMO4P61968 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC14.25□□□□□ -0.13
LMO4P61968 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMO4P61968 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC14.25□□□□□ -0.13
LMO4P61968 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMO4P61968 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC14.25□□□□□ -0.13
LMO4P61968 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMO4P61968 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC14.25□□□□□ -0.13
LMO4P61968 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMO4P61968 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC14.25□□□□□ -0.13
LMO4P61968 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC14.25□□□□□ -0.13
LMO4P61968 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.25□□□□□ -0.13
LMO4P61968 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 81.9 ms