Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 GMCL1P1-201ENST00000463439 1581 ntBASIC12.3□□□□□ -0.44
CKS1BP61024 AC027097.1-202ENST00000592201 1954 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 TYSND1-202ENST00000335494 3397 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 BANP-203ENST00000393207 2438 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 SNX17-201ENST00000233575 2044 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 AC008556.1-201ENST00000610908 2040 ntBASIC12.3□□□□□ -0.44
CKS1BP61024 GPS1-201ENST00000306823 1842 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 STOML1-209ENST00000564777 1849 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 POR-209ENST00000439269 1858 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 AC096719.1-201ENST00000510705 1874 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 OSMR-201ENST00000274276 5539 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 AP000593.1-201ENST00000393668 712 ntBASIC12.3□□□□□ -0.44
CKS1BP61024 GAS7-202ENST00000396115 929 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC12.3□□□□□ -0.44
CKS1BP61024 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 RNA5SP413-201ENST00000516373 109 ntBASIC12.3□□□□□ -0.44
CKS1BP61024 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC12.3□□□□□ -0.44
CKS1BP61024 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 HOXA3-201ENST00000317201 2761 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 PDE12-202ENST00000487257 3040 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 TMEM200C-202ENST00000581347 10638 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 LRP8-201ENST00000306052 7648 ntAPPRIS P3 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC12.3□□□□□ -0.44
CKS1BP61024 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 TRIM11-201ENST00000284551 2715 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC12.3□□□□□ -0.44
CKS1BP61024 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC12.3□□□□□ -0.44
CKS1BP61024 PATZ1-202ENST00000266269 3781 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 EIF4G1-203ENST00000350481 4990 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC12.29□□□□□ -0.44
CKS1BP61024 MFN2-203ENST00000444836 4531 ntAPPRIS P1 TSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 ACSL3-202ENST00000392066 3147 ntAPPRIS P1 TSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 POU2F2-207ENST00000529067 2657 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 ARFGAP1-212ENST00000519604 3191 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 DMPK-202ENST00000343373 3227 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 CRYBG1-204ENST00000633556 9909 ntAPPRIS ALT2 TSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 NIFKP9-201ENST00000419265 221 ntBASIC12.29□□□□□ -0.44
CKS1BP61024 LRRC75A-AS1-205ENST00000475953 1201 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC12.29□□□□□ -0.44
CKS1BP61024 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC12.29□□□□□ -0.44
CKS1BP61024 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 CABP2-204ENST00000636477 941 ntTSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 GAMT-205ENST00000640762 751 ntTSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 NSUN2-201ENST00000264670 3303 ntAPPRIS P3 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 SLC7A4-201ENST00000382932 2313 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 MRPL4-202ENST00000307422 1320 ntAPPRIS P2 TSL 5 BASIC12.29□□□□□ -0.44
CKS1BP61024 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC12.29□□□□□ -0.44
CKS1BP61024 BRAT1-201ENST00000340611 2915 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
CKS1BP61024 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC12.29□□□□□ -0.44
CKS1BP61024 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC12.29□□□□□ -0.44
Retrieved 100 of 98,524 protein–RNA pairs in 30.7 ms