Protein–RNA interactions for Protein: P55287

CDH11, Cadherin-11, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH11P55287 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.04■□□□□ 0.16
CDH11P55287 CRELD2-204ENST00000407217 1230 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 SPDYE13P-201ENST00000445314 798 ntBASIC16.04■□□□□ 0.16
CDH11P55287 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.04■□□□□ 0.16
CDH11P55287 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC16.04■□□□□ 0.16
CDH11P55287 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.04■□□□□ 0.16
CDH11P55287 IFNL4-202ENST00000616270 1132 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 LINC01451-201ENST00000623792 534 ntBASIC16.04■□□□□ 0.16
CDH11P55287 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
CDH11P55287 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 DDIT4L-201ENST00000273990 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 DPP9-AS1-201ENST00000381796 3071 ntTSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
CDH11P55287 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
CDH11P55287 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 FAM3A-204ENST00000369643 1521 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 LUC7L-204ENST00000397783 1504 ntTSL 2 BASIC16.04■□□□□ 0.16
CDH11P55287 CYP2D7-208ENST00000614967 1504 ntTSL 5 BASIC16.04■□□□□ 0.16
CDH11P55287 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CDH11P55287 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 UNKL-202ENST00000301712 1431 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 PTGER3-202ENST00000351052 1404 ntAPPRIS ALT2 TSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 LINC00167-201ENST00000530583 1419 ntBASIC16.03■□□□□ 0.16
CDH11P55287 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
CDH11P55287 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC16.03■□□□□ 0.16
CDH11P55287 UNC119-204ENST00000470125 2050 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 PXMP4-201ENST00000217398 979 ntTSL 2 BASIC16.03■□□□□ 0.16
CDH11P55287 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC16.03■□□□□ 0.16
CDH11P55287 AC234772.2-201ENST00000456532 375 ntTSL 3 BASIC16.03■□□□□ 0.16
CDH11P55287 AC051649.1-201ENST00000509204 330 ntTSL 3 BASIC16.03■□□□□ 0.16
CDH11P55287 LY6E-209ENST00000521003 740 ntAPPRIS P2 TSL 2 BASIC16.03■□□□□ 0.16
CDH11P55287 MIR3917-201ENST00000580971 93 ntBASIC16.03■□□□□ 0.16
CDH11P55287 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.03■□□□□ 0.16
CDH11P55287 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 SEL1L-204ENST00000555824 1631 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 FBLN7-205ENST00000409903 1989 ntTSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.03■□□□□ 0.16
CDH11P55287 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 AC009949.1-201ENST00000623048 1830 ntBASIC16.03■□□□□ 0.16
CDH11P55287 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC16.03■□□□□ 0.16
CDH11P55287 TACC3-201ENST00000313288 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
CDH11P55287 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 RMDN3-202ENST00000338376 2251 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 NEK2-205ENST00000540251 1318 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH11P55287 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH11P55287 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 LINC02199-203ENST00000510229 496 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH11P55287 GPHA2-202ENST00000532246 466 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH11P55287 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC16.02■□□□□ 0.16
CDH11P55287 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC16.02■□□□□ 0.16
CDH11P55287 AL136038.4-201ENST00000603606 1261 ntBASIC16.02■□□□□ 0.16
CDH11P55287 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH11P55287 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.02■□□□□ 0.16
CDH11P55287 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC16.02■□□□□ 0.16
CDH11P55287 ARHGEF40-201ENST00000298694 5919 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms