Protein–RNA interactions for Protein: P55285

CDH6, Cadherin-6, humanhuman

Predictions only

Length 790 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH6P55285 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.19■□□□□ 0.5
CDH6P55285 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC18.19■□□□□ 0.5
CDH6P55285 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC18.19■□□□□ 0.5
CDH6P55285 AL049757.1-201ENST00000616842 1596 ntBASIC18.19■□□□□ 0.5
CDH6P55285 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.19■□□□□ 0.5
CDH6P55285 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC18.19■□□□□ 0.5
CDH6P55285 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 TRNT1-205ENST00000402675 1935 ntTSL 2 BASIC18.19■□□□□ 0.5
CDH6P55285 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
CDH6P55285 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
CDH6P55285 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC18.18■□□□□ 0.5
CDH6P55285 PORCN-205ENST00000367574 1368 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 PORCN-214ENST00000537758 1371 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 HAUS8-201ENST00000253669 1568 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 PFKFB3-215ENST00000536985 2094 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC18.18■□□□□ 0.5
CDH6P55285 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
CDH6P55285 PSMB8-202ENST00000374882 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 MPIG6B-205ENST00000375810 910 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC18.18■□□□□ 0.5
CDH6P55285 KRT17P6-201ENST00000453795 1220 ntBASIC18.18■□□□□ 0.5
CDH6P55285 MINOS1P3-201ENST00000457048 203 ntBASIC18.18■□□□□ 0.5
CDH6P55285 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.18■□□□□ 0.5
CDH6P55285 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 AC111152.3-201ENST00000569699 673 ntBASIC18.18■□□□□ 0.5
CDH6P55285 MIR3180-1-201ENST00000580374 94 ntBASIC18.18■□□□□ 0.5
CDH6P55285 MIR3180-3-201ENST00000584616 94 ntBASIC18.18■□□□□ 0.5
CDH6P55285 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 C9orf43-202ENST00000374165 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 SNTB2-201ENST00000336278 9789 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 NODAL-201ENST00000287139 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 SGSM2-202ENST00000426855 4734 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC18.18■□□□□ 0.5
CDH6P55285 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
CDH6P55285 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 GXYLT2-201ENST00000389617 3260 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 LRP4-201ENST00000378623 8076 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 KRT8P10-201ENST00000450021 1447 ntBASIC18.17■□□□□ 0.5
CDH6P55285 P2RX5-209ENST00000552276 1642 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH6P55285 SUSD4-208ENST00000494793 1833 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 ATP5G2P1-201ENST00000433580 426 ntBASIC18.17■□□□□ 0.5
CDH6P55285 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.17■□□□□ 0.5
CDH6P55285 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH6P55285 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 AC011467.2-201ENST00000598425 242 ntBASIC18.17■□□□□ 0.5
CDH6P55285 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 NPAP1P7-201ENST00000613027 823 ntBASIC18.17■□□□□ 0.5
CDH6P55285 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC18.17■□□□□ 0.5
CDH6P55285 TP73-AS1-210ENST00000637775 1455 ntBASIC18.17■□□□□ 0.5
CDH6P55285 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 ZNF512B-201ENST00000369888 5919 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 KIAA1324L-207ENST00000444627 3527 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 NSUN5P1-202ENST00000421140 1535 ntBASIC18.17■□□□□ 0.5
CDH6P55285 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 NSUN5P2-203ENST00000457352 1529 ntBASIC18.17■□□□□ 0.5
CDH6P55285 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.17■□□□□ 0.5
CDH6P55285 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
CDH6P55285 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
CDH6P55285 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 MAP4K2-202ENST00000377350 2931 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
CDH6P55285 NLRP6-203ENST00000534750 2936 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
CDH6P55285 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 68.7 ms