Protein–RNA interactions for Protein: P54753

EPHB3, Ephrin type-B receptor 3, humanhuman

Predictions only

Length 998 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EPHB3P54753 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC18.19■□□□□ 0.5
EPHB3P54753 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.19■□□□□ 0.5
EPHB3P54753 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 RBM14-202ENST00000393979 1426 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
EPHB3P54753 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC18.19■□□□□ 0.5
EPHB3P54753 USP30-AS1-201ENST00000478808 656 ntTSL 2 BASIC18.19■□□□□ 0.5
EPHB3P54753 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 ARF1-214ENST00000541182 2006 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
EPHB3P54753 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC18.19■□□□□ 0.5
EPHB3P54753 AC005829.1-201ENST00000570002 483 ntBASIC18.19■□□□□ 0.5
EPHB3P54753 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC18.19■□□□□ 0.5
EPHB3P54753 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 ZNF133-211ENST00000538547 2245 ntTSL 2 BASIC18.19■□□□□ 0.5
EPHB3P54753 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 HYAL3-202ENST00000359051 1635 ntTSL 5 BASIC18.19■□□□□ 0.5
EPHB3P54753 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 AL590787.1-201ENST00000568856 1315 ntBASIC18.19■□□□□ 0.5
EPHB3P54753 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
EPHB3P54753 AL135999.2-201ENST00000622438 1686 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 UBE2G1-204ENST00000572484 1514 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC18.18■□□□□ 0.5
EPHB3P54753 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC18.18■□□□□ 0.5
EPHB3P54753 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 PARK7-203ENST00000377491 977 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
EPHB3P54753 NABP1-203ENST00000409510 843 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 IGLL3P-201ENST00000412472 434 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 AC211486.1-202ENST00000416371 468 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 AC211476.1-201ENST00000503899 468 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC18.18■□□□□ 0.5
EPHB3P54753 AC096734.2-201ENST00000562054 433 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC18.18■□□□□ 0.5
EPHB3P54753 AP001160.2-201ENST00000596071 487 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 AL139327.4-201ENST00000612362 153 ntBASIC18.18■□□□□ 0.5
EPHB3P54753 TMEM178A-206ENST00000618232 1286 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC18.18■□□□□ 0.5
EPHB3P54753 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 NPTX2-201ENST00000265634 2700 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 SLC35G6-201ENST00000412468 1697 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 DIP2A-203ENST00000435722 2760 ntTSL 2 BASIC18.18■□□□□ 0.5
EPHB3P54753 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
EPHB3P54753 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
EPHB3P54753 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC18.18■□□□□ 0.5
EPHB3P54753 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
EPHB3P54753 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 ACTB-201ENST00000331789 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
EPHB3P54753 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC18.17■□□□□ 0.5
EPHB3P54753 E2F2-201ENST00000361729 5191 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC18.17■□□□□ 0.5
EPHB3P54753 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC18.17■□□□□ 0.5
EPHB3P54753 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC18.17■□□□□ 0.5
EPHB3P54753 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC18.17■□□□□ 0.5
EPHB3P54753 TNFRSF13B-203ENST00000579315 600 ntAPPRIS ALT2 TSL 3 BASIC18.17■□□□□ 0.5
EPHB3P54753 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC18.17■□□□□ 0.5
EPHB3P54753 AL513190.1-201ENST00000621254 727 ntBASIC18.17■□□□□ 0.5
EPHB3P54753 KRT28-201ENST00000306658 1685 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 MIOX-202ENST00000395732 1658 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
EPHB3P54753 GORASP1-206ENST00000422110 2523 ntTSL 2 BASIC18.17■□□□□ 0.5
EPHB3P54753 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.17■□□□□ 0.5
EPHB3P54753 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 EIF4A1-203ENST00000577269 1319 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 UQCRC1-201ENST00000203407 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC18.17■□□□□ 0.5
EPHB3P54753 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC18.17■□□□□ 0.5
EPHB3P54753 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 MMD2-202ENST00000404774 2415 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
EPHB3P54753 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
EPHB3P54753 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.16■□□□□ 0.5
EPHB3P54753 BPGM-202ENST00000393132 2051 ntAPPRIS P1 TSL 5 BASIC18.16■□□□□ 0.5
EPHB3P54753 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC18.16■□□□□ 0.5
EPHB3P54753 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.16■□□□□ 0.5
EPHB3P54753 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC18.16■□□□□ 0.5
EPHB3P54753 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
EPHB3P54753 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 48.1 ms