Protein–RNA interactions for Protein: P51790

CLCN3, H(+)/Cl(-) exchange transporter 3, humanhuman

Predictions only

Length 818 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCN3P51790 ACTG1P4-201ENST00000425123 1122 ntBASIC19.15■□□□□ 0.66
CLCN3P51790 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCN3P51790 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC19.15■□□□□ 0.66
CLCN3P51790 AC040169.1-201ENST00000565382 521 ntBASIC19.15■□□□□ 0.66
CLCN3P51790 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
CLCN3P51790 LRCH2-202ENST00000538422 4868 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC19.15■□□□□ 0.66
CLCN3P51790 CD276-203ENST00000537340 2439 ntTSL 2 BASIC19.15■□□□□ 0.66
CLCN3P51790 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 CGB7-202ENST00000596965 1949 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
CLCN3P51790 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 CXXC1-212ENST00000589940 2242 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
CLCN3P51790 ADAM33-202ENST00000356518 3677 ntAPPRIS P3 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLCN3P51790 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
CLCN3P51790 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
CLCN3P51790 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC19.14■□□□□ 0.66
CLCN3P51790 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.66
CLCN3P51790 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC19.14■□□□□ 0.65
CLCN3P51790 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 SNX1-208ENST00000559844 1971 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 METTL26-205ENST00000397666 726 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC19.14■□□□□ 0.65
CLCN3P51790 PDE6D-202ENST00000409772 672 ntTSL 3 BASIC19.14■□□□□ 0.65
CLCN3P51790 VN2R19P-201ENST00000442399 1052 ntBASIC19.14■□□□□ 0.65
CLCN3P51790 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC19.14■□□□□ 0.65
CLCN3P51790 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.14■□□□□ 0.65
CLCN3P51790 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 AC010327.4-202ENST00000591484 748 ntBASIC19.14■□□□□ 0.65
CLCN3P51790 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.14■□□□□ 0.65
CLCN3P51790 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 GFI1-201ENST00000294702 2784 ntAPPRIS P1 TSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 GNAI2-204ENST00000440628 1663 ntTSL 5 BASIC19.14■□□□□ 0.65
CLCN3P51790 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC19.14■□□□□ 0.65
CLCN3P51790 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC19.14■□□□□ 0.65
CLCN3P51790 EFR3A-201ENST00000254624 5438 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 LRPPRC-203ENST00000409946 1848 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CLCN3P51790 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
CLCN3P51790 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC19.13■□□□□ 0.65
CLCN3P51790 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 AP002414.1-201ENST00000391405 1147 ntBASIC19.13■□□□□ 0.65
CLCN3P51790 YBX2P1-201ENST00000394192 760 ntBASIC19.13■□□□□ 0.65
CLCN3P51790 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC19.13■□□□□ 0.65
CLCN3P51790 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
CLCN3P51790 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC19.13■□□□□ 0.65
CLCN3P51790 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.13■□□□□ 0.65
CLCN3P51790 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.13■□□□□ 0.65
CLCN3P51790 AC018845.2-201ENST00000568326 409 ntBASIC19.13■□□□□ 0.65
CLCN3P51790 AL590787.1-201ENST00000568856 1315 ntBASIC19.13■□□□□ 0.65
CLCN3P51790 JMJD6-205ENST00000585429 1330 ntTSL 5 BASIC19.13■□□□□ 0.65
CLCN3P51790 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLCN3P51790 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CLCN3P51790 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC19.13■□□□□ 0.65
CLCN3P51790 MFSD11-219ENST00000593181 1922 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC19.13■□□□□ 0.65
CLCN3P51790 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CLCN3P51790 RNF165-205ENST00000588679 2904 ntBASIC19.13■□□□□ 0.65
CLCN3P51790 ZNF746-202ENST00000458143 3797 ntAPPRIS ALT2 TSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CLCN3P51790 ACOXL-205ENST00000439055 2373 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 LYSMD4-203ENST00000378904 2122 ntBASIC19.12■□□□□ 0.65
CLCN3P51790 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 TBC1D10C-203ENST00000526387 1520 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC19.12■□□□□ 0.65
CLCN3P51790 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CLCN3P51790 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.12■□□□□ 0.65
CLCN3P51790 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CLCN3P51790 HCG4B-203ENST00000450128 991 ntBASIC19.12■□□□□ 0.65
CLCN3P51790 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.12■□□□□ 0.65
CLCN3P51790 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.12■□□□□ 0.65
CLCN3P51790 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC19.12■□□□□ 0.65
CLCN3P51790 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 48.2 ms