Protein–RNA interactions for Protein: P49959

MRE11, Double-strand break repair protein MRE11, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MRE11P49959 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC20.4■□□□□ 0.86
MRE11P49959 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
MRE11P49959 AC105917.1-201ENST00000506637 2539 ntBASIC20.4■□□□□ 0.86
MRE11P49959 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC20.39■□□□□ 0.86
MRE11P49959 GMDS-AS1-201ENST00000456943 2308 ntTSL 2 BASIC20.39■□□□□ 0.86
MRE11P49959 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.86
MRE11P49959 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.86
MRE11P49959 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC20.39■□□□□ 0.86
MRE11P49959 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC20.39■□□□□ 0.86
MRE11P49959 NAT6-205ENST00000443842 1820 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.86
MRE11P49959 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
MRE11P49959 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 PHOSPHO2-201ENST00000359744 1125 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC20.39■□□□□ 0.85
MRE11P49959 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 AC128688.1-201ENST00000487626 519 ntBASIC20.39■□□□□ 0.85
MRE11P49959 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC20.39■□□□□ 0.85
MRE11P49959 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 AC016582.3-201ENST00000589653 561 ntTSL 4 BASIC20.39■□□□□ 0.85
MRE11P49959 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
MRE11P49959 AC005052.1-201ENST00000625181 2492 ntBASIC20.39■□□□□ 0.85
MRE11P49959 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 MALT1-202ENST00000348428 9368 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 BTBD3-201ENST00000254977 4686 ntAPPRIS ALT1 TSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 ST3GAL5-229ENST00000638986 2331 ntAPPRIS ALT2 TSL 5 BASIC20.39■□□□□ 0.85
MRE11P49959 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 AL513523.2-202ENST00000427283 2040 ntBASIC20.39■□□□□ 0.85
MRE11P49959 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 PRPF31-202ENST00000391755 1767 ntTSL 5 BASIC20.39■□□□□ 0.85
MRE11P49959 FYTTD1-205ENST00000424384 1758 ntTSL 2 BASIC20.39■□□□□ 0.85
MRE11P49959 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 SCRIB-203ENST00000377533 5108 ntAPPRIS ALT2 TSL 1 (best) BASIC20.39■□□□□ 0.85
MRE11P49959 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 SNCA-203ENST00000394986 1420 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 C19orf54-201ENST00000378313 2753 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 SDHAP2-201ENST00000455183 2001 ntBASIC20.38■□□□□ 0.85
MRE11P49959 AC092068.3-201ENST00000587894 2016 ntBASIC20.38■□□□□ 0.85
MRE11P49959 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC20.38■□□□□ 0.85
MRE11P49959 C19orf84-202ENST00000574814 1318 ntAPPRIS P2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC20.38■□□□□ 0.85
MRE11P49959 BCL2L10-201ENST00000260442 1249 ntAPPRIS P3 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC20.38■□□□□ 0.85
MRE11P49959 FAM8A6P-201ENST00000407496 1135 ntBASIC20.38■□□□□ 0.85
MRE11P49959 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC20.38■□□□□ 0.85
MRE11P49959 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 PIGX-202ENST00000392391 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
MRE11P49959 UCHL5-202ENST00000367449 1507 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC20.37■□□□□ 0.85
MRE11P49959 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC20.37■□□□□ 0.85
MRE11P49959 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.37■□□□□ 0.85
MRE11P49959 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC20.37■□□□□ 0.85
MRE11P49959 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC20.37■□□□□ 0.85
MRE11P49959 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC20.37■□□□□ 0.85
MRE11P49959 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 GLRB-205ENST00000512619 728 ntTSL 3 BASIC20.37■□□□□ 0.85
MRE11P49959 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC20.37■□□□□ 0.85
MRE11P49959 AC018445.1-201ENST00000621571 568 ntTSL 4 BASIC20.37■□□□□ 0.85
MRE11P49959 AL807752.6-202ENST00000622933 765 ntAPPRIS P5 TSL 3 BASIC20.37■□□□□ 0.85
MRE11P49959 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC20.37■□□□□ 0.85
MRE11P49959 RAPGEFL1-209ENST00000544503 2079 ntTSL 2 BASIC20.37■□□□□ 0.85
MRE11P49959 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC20.37■□□□□ 0.85
MRE11P49959 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
MRE11P49959 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
MRE11P49959 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC20.37■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms