Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC20.13■□□□□ 0.81
CTCFP49711 FAM185BP-201ENST00000443595 716 ntBASIC20.13■□□□□ 0.81
CTCFP49711 SPTLC1P1-201ENST00000447199 261 ntBASIC20.13■□□□□ 0.81
CTCFP49711 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC20.13■□□□□ 0.81
CTCFP49711 AC243562.1-201ENST00000560672 389 ntBASIC20.13■□□□□ 0.81
CTCFP49711 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
CTCFP49711 SPTSSB-204ENST00000617024 1292 ntBASIC20.13■□□□□ 0.81
CTCFP49711 LYSMD4-202ENST00000344791 2885 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC20.13■□□□□ 0.81
CTCFP49711 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
CTCFP49711 ZDHHC18-202ENST00000374142 5020 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 ADORA2A-215ENST00000618076 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 IRX1P1-201ENST00000438849 1838 ntBASIC20.13■□□□□ 0.81
CTCFP49711 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CTCFP49711 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 AC004408.2-201ENST00000623613 2777 ntBASIC20.12■□□□□ 0.81
CTCFP49711 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 STX6-204ENST00000542060 4809 ntTSL 2 BASIC20.12■□□□□ 0.81
CTCFP49711 KIF22-203ENST00000561482 2505 ntTSL 2 BASIC20.12■□□□□ 0.81
CTCFP49711 SEMA6C-210ENST00000621728 1918 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 POLDIP3-202ENST00000339677 783 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CTCFP49711 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 ROPN1-207ENST00000484329 566 ntTSL 3 BASIC20.12■□□□□ 0.81
CTCFP49711 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CTCFP49711 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC20.12■□□□□ 0.81
CTCFP49711 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.12■□□□□ 0.81
CTCFP49711 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 CYP2D6-203ENST00000360608 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC20.12■□□□□ 0.81
CTCFP49711 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 CFAP77-203ENST00000393216 1638 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 NDUFV1-216ENST00000529927 1503 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CTCFP49711 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC20.12■□□□□ 0.81
CTCFP49711 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CTCFP49711 ARMC6-220ENST00000546344 1814 ntTSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CTCFP49711 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC20.11■□□□□ 0.81
CTCFP49711 FAM160A2-201ENST00000265978 3481 ntAPPRIS P3 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC20.11■□□□□ 0.81
CTCFP49711 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC20.11■□□□□ 0.81
CTCFP49711 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 CYB561-216ENST00000582297 897 ntTSL 3 BASIC20.11■□□□□ 0.81
CTCFP49711 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 TMEM261P1-201ENST00000604899 340 ntBASIC20.11■□□□□ 0.81
CTCFP49711 IGHV3-72-202ENST00000621503 303 ntBASIC20.11■□□□□ 0.81
CTCFP49711 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 SEPT6-202ENST00000354228 1576 ntAPPRIS P4 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 BTD-202ENST00000383778 2261 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 EIF3B-202ENST00000397011 2966 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 PLPBP-201ENST00000328195 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CTCFP49711 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CTCFP49711 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC20.11■□□□□ 0.81
CTCFP49711 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC20.11■□□□□ 0.81
CTCFP49711 SLC18A1-203ENST00000381608 1419 ntTSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 EVL-202ENST00000402714 2353 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 SNTG2-202ENST00000407292 1436 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 APAF1-210ENST00000551964 5444 ntAPPRIS P4 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 MCHR2-202ENST00000369212 1311 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 CSNK1G2-AS1-201ENST00000314315 1252 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC20.1■□□□□ 0.81
CTCFP49711 AC092506.1-202ENST00000401022 528 ntBASIC20.1■□□□□ 0.81
CTCFP49711 SPDYE14P-201ENST00000442619 822 ntBASIC20.1■□□□□ 0.81
CTCFP49711 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC20.1■□□□□ 0.81
CTCFP49711 PPP6R2P1-201ENST00000450880 1275 ntBASIC20.1■□□□□ 0.81
CTCFP49711 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
CTCFP49711 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 RAB43P1-201ENST00000561790 589 ntBASIC20.1■□□□□ 0.81
CTCFP49711 AC009093.8-202ENST00000562902 677 ntTSL 2 BASIC20.1■□□□□ 0.81
CTCFP49711 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
CTCFP49711 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC20.1■□□□□ 0.81
CTCFP49711 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC20.1■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms