Protein–RNA interactions for Protein: P19838

NFKB1, Nuclear factor NF-kappa-B p105 subunit, humanhuman

Predictions only

Length 968 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NFKB1P19838 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC17.78■□□□□ 0.44
NFKB1P19838 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
NFKB1P19838 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC17.78■□□□□ 0.44
NFKB1P19838 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
NFKB1P19838 IFFO1-211ENST00000615885 2775 ntTSL 5 BASIC17.78■□□□□ 0.44
NFKB1P19838 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
NFKB1P19838 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
NFKB1P19838 FUT8-AS1-201ENST00000621019 1521 ntBASIC17.77■□□□□ 0.44
NFKB1P19838 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NFKB1P19838 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
NFKB1P19838 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
NFKB1P19838 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 EDA-203ENST00000374552 5278 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
NFKB1P19838 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.77■□□□□ 0.44
NFKB1P19838 CTNS-203ENST00000399306 803 ntTSL 3 BASIC17.77■□□□□ 0.44
NFKB1P19838 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC17.77■□□□□ 0.44
NFKB1P19838 SURF4-206ENST00000485435 1206 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 RAB6A-207ENST00000541588 758 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 ANKRD34C-AS1-205ENST00000560452 576 ntTSL 4 BASIC17.77■□□□□ 0.44
NFKB1P19838 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
NFKB1P19838 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC17.77■□□□□ 0.44
NFKB1P19838 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
NFKB1P19838 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
NFKB1P19838 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
NFKB1P19838 AMIGO2-202ENST00000429635 3058 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
NFKB1P19838 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
NFKB1P19838 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 WAC-202ENST00000347934 2839 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 FBF1-205ENST00000586717 4825 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
NFKB1P19838 ETV7-204ENST00000373738 1570 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 NUS1P2-201ENST00000417358 873 ntBASIC17.76■□□□□ 0.43
NFKB1P19838 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC17.76■□□□□ 0.43
NFKB1P19838 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC17.76■□□□□ 0.43
NFKB1P19838 PNN-202ENST00000553331 656 ntTSL 3 BASIC17.76■□□□□ 0.43
NFKB1P19838 C1QTNF1-205ENST00000578229 1294 ntTSL 4 BASIC17.76■□□□□ 0.43
NFKB1P19838 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 AD001527.2-201ENST00000622994 785 ntBASIC17.76■□□□□ 0.43
NFKB1P19838 EPHX2-204ENST00000518379 1959 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.76■□□□□ 0.43
NFKB1P19838 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 ADAD1-203ENST00000388725 1918 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 SLX1A-SULT1A3-202ENST00000565342 2195 ntTSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 ZNF211-201ENST00000240731 2440 ntAPPRIS P4 TSL 2 BASIC17.76■□□□□ 0.43
NFKB1P19838 AGAP2-201ENST00000257897 5388 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
NFKB1P19838 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 CLDN6-202ENST00000396925 1739 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 PWP1-202ENST00000541166 1722 ntTSL 2 BASIC17.75■□□□□ 0.43
NFKB1P19838 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 AC132938.5-201ENST00000624980 1813 ntBASIC17.75■□□□□ 0.43
NFKB1P19838 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 VPS51-201ENST00000279281 2714 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 AC116353.5-201ENST00000638148 1699 ntBASIC17.75■□□□□ 0.43
NFKB1P19838 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 HSPA1A-202ENST00000608703 1909 ntTSL 2 BASIC17.75■□□□□ 0.43
NFKB1P19838 ICAM2-203ENST00000449662 1221 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 YPEL3-204ENST00000563788 730 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
NFKB1P19838 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC17.75■□□□□ 0.43
NFKB1P19838 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC17.75■□□□□ 0.43
NFKB1P19838 AC138894.3-201ENST00000603787 634 ntBASIC17.75■□□□□ 0.43
NFKB1P19838 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 CCNC-219ENST00000627680 896 ntTSL 5 BASIC17.75■□□□□ 0.43
NFKB1P19838 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
NFKB1P19838 POC1A-203ENST00000474012 1760 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
NFKB1P19838 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 44 ms