Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 AC083949.1-201ENST00000422013 657 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A3P12111 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC17.98■□□□□ 0.47
COL6A3P12111 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
COL6A3P12111 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC17.98■□□□□ 0.47
COL6A3P12111 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.97■□□□□ 0.47
COL6A3P12111 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A3P12111 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A3P12111 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A3P12111 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 AL355334.1-201ENST00000417713 215 ntBASIC17.97■□□□□ 0.47
COL6A3P12111 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC17.97■□□□□ 0.47
COL6A3P12111 AC093004.1-201ENST00000508850 424 ntBASIC17.97■□□□□ 0.47
COL6A3P12111 AC079328.1-201ENST00000560358 952 ntBASIC17.97■□□□□ 0.47
COL6A3P12111 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.97■□□□□ 0.47
COL6A3P12111 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC17.97■□□□□ 0.47
COL6A3P12111 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 UNG-202ENST00000336865 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 AL138767.1-201ENST00000354527 744 ntTSL 3 BASIC17.97■□□□□ 0.47
COL6A3P12111 UROS-203ENST00000368786 1216 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.97■□□□□ 0.47
COL6A3P12111 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.97■□□□□ 0.47
COL6A3P12111 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC17.97■□□□□ 0.47
COL6A3P12111 AL844908.2-201ENST00000609461 460 ntBASIC17.97■□□□□ 0.47
COL6A3P12111 AL590787.1-201ENST00000568856 1315 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC17.96■□□□□ 0.47
COL6A3P12111 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.96■□□□□ 0.47
COL6A3P12111 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC17.96■□□□□ 0.47
COL6A3P12111 FCGR1B-203ENST00000369384 1044 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A3P12111 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL6A3P12111 PSORS1C3-201ENST00000412143 593 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A3P12111 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC17.96■□□□□ 0.47
COL6A3P12111 AC140481.1-201ENST00000448777 706 ntTSL 3 BASIC17.96■□□□□ 0.47
COL6A3P12111 AHSA2-208ENST00000489653 1197 ntAPPRIS P1 TSL 5 BASIC17.96■□□□□ 0.47
COL6A3P12111 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC17.96■□□□□ 0.47
COL6A3P12111 AC128714.1-201ENST00000637035 887 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 SPDYE19P-201ENST00000338590 713 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 AC087499.6-201ENST00000411576 835 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 IGHV3-62-201ENST00000520057 340 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.96■□□□□ 0.47
COL6A3P12111 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A3P12111 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A3P12111 AC093525.8-201ENST00000624099 1342 ntBASIC17.96■□□□□ 0.47
COL6A3P12111 SEMA3D-202ENST00000444867 1605 ntTSL 1 (best) BASIC17.96■□□□□ 0.47
COL6A3P12111 AL445238.1-203ENST00000606050 1525 ntTSL 2 BASIC17.96■□□□□ 0.46
COL6A3P12111 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC17.95■□□□□ 0.46
COL6A3P12111 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC17.95■□□□□ 0.46
COL6A3P12111 AC008770.3-202ENST00000591944 567 ntTSL 4 BASIC17.95■□□□□ 0.46
COL6A3P12111 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 PDIA3P1-201ENST00000471856 1510 ntBASIC17.95■□□□□ 0.46
COL6A3P12111 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 STYXL1-208ENST00000451157 1570 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 DUSP5-201ENST00000369583 2557 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 TTC29-201ENST00000325106 1785 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
COL6A3P12111 COX5BP2-201ENST00000392354 334 ntBASIC17.95■□□□□ 0.46
COL6A3P12111 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 HINT2P1-201ENST00000419438 481 ntBASIC17.95■□□□□ 0.46
COL6A3P12111 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 CCKBR-203ENST00000525462 2138 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 AC087645.2-202ENST00000586583 643 ntTSL 4 BASIC17.95■□□□□ 0.46
COL6A3P12111 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A3P12111 CASP16P-204ENST00000635032 809 ntBASIC17.95■□□□□ 0.46
COL6A3P12111 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 NR1H3-202ENST00000405576 1352 ntTSL 5 BASIC17.95■□□□□ 0.46
COL6A3P12111 SP100-208ENST00000427101 1922 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A3P12111 GPAT2P1-202ENST00000471661 1569 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A3P12111 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A3P12111 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC17.95■□□□□ 0.46
COL6A3P12111 CALR4P-201ENST00000431943 946 ntBASIC17.95■□□□□ 0.46
COL6A3P12111 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC17.95■□□□□ 0.46
COL6A3P12111 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC17.95■□□□□ 0.46
COL6A3P12111 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC17.95■□□□□ 0.46
COL6A3P12111 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 VOPP1-201ENST00000285279 2962 ntAPPRIS P1 TSL 1 (best) BASIC17.95■□□□□ 0.46
COL6A3P12111 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 ABHD14B-203ENST00000395008 1818 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A3P12111 SLC25A6P2-201ENST00000497974 877 ntBASIC17.94■□□□□ 0.46
COL6A3P12111 SERF1A-205ENST00000507348 663 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 RCN1-210ENST00000532942 1191 ntAPPRIS ALT2 TSL 2 BASIC17.94■□□□□ 0.46
COL6A3P12111 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC17.94■□□□□ 0.46
COL6A3P12111 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC17.94■□□□□ 0.46
COL6A3P12111 AC016629.1-201ENST00000596579 586 ntBASIC17.94■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms