Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC16.97■□□□□ 0.31
HOXC4P09017 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
HOXC4P09017 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
HOXC4P09017 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC4P09017 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC4P09017 AC099684.1-202ENST00000425277 1747 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC4P09017 ATP6AP2-224ENST00000637327 1929 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
HOXC4P09017 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC4P09017 YBX2P1-201ENST00000394192 760 ntBASIC16.96■□□□□ 0.31
HOXC4P09017 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
HOXC4P09017 IGLL3P-201ENST00000412472 434 ntBASIC16.96■□□□□ 0.31
HOXC4P09017 MCCD1P2-201ENST00000423228 335 ntBASIC16.96■□□□□ 0.31
HOXC4P09017 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.96■□□□□ 0.31
HOXC4P09017 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
HOXC4P09017 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC4P09017 HAGH-208ENST00000566709 1291 ntTSL 5 BASIC16.96■□□□□ 0.31
HOXC4P09017 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC4P09017 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
HOXC4P09017 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC4P09017 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC4P09017 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC4P09017 RASL11A-201ENST00000241463 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
HOXC4P09017 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC16.95■□□□□ 0.3
HOXC4P09017 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
HOXC4P09017 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HOXC4P09017 GAL3ST1-201ENST00000338911 1782 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXC4P09017 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 AL138688.1-201ENST00000624851 1594 ntBASIC16.95■□□□□ 0.3
HOXC4P09017 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC16.95■□□□□ 0.3
HOXC4P09017 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 UPF3AP3-201ENST00000420996 769 ntBASIC16.95■□□□□ 0.3
HOXC4P09017 ARPC4-203ENST00000433034 926 ntTSL 3 BASIC16.95■□□□□ 0.3
HOXC4P09017 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 AC139530.3-201ENST00000620344 690 ntBASIC16.95■□□□□ 0.3
HOXC4P09017 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC16.95■□□□□ 0.3
HOXC4P09017 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.95■□□□□ 0.3
HOXC4P09017 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
HOXC4P09017 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 ALKBH3-201ENST00000302708 1474 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HOXC4P09017 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
HOXC4P09017 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 RDH8-203ENST00000591589 1715 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 LRRD1-201ENST00000343318 2073 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.94■□□□□ 0.3
HOXC4P09017 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 CD99L2-206ENST00000466436 988 ntAPPRIS P4 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.94■□□□□ 0.3
HOXC4P09017 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.94■□□□□ 0.3
HOXC4P09017 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 GNAS-203ENST00000306120 1878 ntBASIC16.94■□□□□ 0.3
HOXC4P09017 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 CBX3P2-201ENST00000579647 1429 ntTSL 2 BASIC16.94■□□□□ 0.3
HOXC4P09017 PIP4K2A-202ENST00000376573 3802 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
HOXC4P09017 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 AC129492.6-201ENST00000611383 1305 ntBASIC16.94■□□□□ 0.3
HOXC4P09017 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC16.94■□□□□ 0.3
HOXC4P09017 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 REEP1-208ENST00000538924 1702 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 UVSSA-207ENST00000511216 2927 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 RESP18-201ENST00000333527 795 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
HOXC4P09017 RPSAP43-201ENST00000402237 625 ntBASIC16.93■□□□□ 0.3
HOXC4P09017 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXC4P09017 FAM185BP-201ENST00000443595 716 ntBASIC16.93■□□□□ 0.3
HOXC4P09017 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC16.93■□□□□ 0.3
HOXC4P09017 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
HOXC4P09017 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC16.93■□□□□ 0.3
HOXC4P09017 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC16.93■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 27.4 ms