Protein–RNA interactions for Protein: P08254

MMP3, Stromelysin-1, humanhuman

Predictions only

Length 477 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP3P08254 AC006116.8-202ENST00000587620 1550 ntBASIC19.22■□□□□ 0.67
MMP3P08254 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 GRAP2-202ENST00000407075 1304 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC19.22■□□□□ 0.67
MMP3P08254 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
MMP3P08254 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC19.21■□□□□ 0.67
MMP3P08254 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.21■□□□□ 0.67
MMP3P08254 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC19.21■□□□□ 0.67
MMP3P08254 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.21■□□□□ 0.67
MMP3P08254 TCF25-225ENST00000614813 2047 ntTSL 5 BASIC19.21■□□□□ 0.67
MMP3P08254 AL513210.1-201ENST00000629608 234 ntBASIC19.21■□□□□ 0.67
MMP3P08254 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
MMP3P08254 LYPLA2-205ENST00000374514 1810 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
MMP3P08254 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MMP3P08254 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.2■□□□□ 0.66
MMP3P08254 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 NTRK1-206ENST00000524377 2432 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC19.2■□□□□ 0.66
MMP3P08254 LRRC27-203ENST00000368613 2113 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.2■□□□□ 0.66
MMP3P08254 AL645939.2-201ENST00000427340 991 ntBASIC19.2■□□□□ 0.66
MMP3P08254 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC19.2■□□□□ 0.66
MMP3P08254 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC19.2■□□□□ 0.66
MMP3P08254 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC19.2■□□□□ 0.66
MMP3P08254 SIGIRR-201ENST00000332725 1639 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
MMP3P08254 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC19.2■□□□□ 0.66
MMP3P08254 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC19.2■□□□□ 0.66
MMP3P08254 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 NKX2-1-203ENST00000518149 2583 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
MMP3P08254 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
MMP3P08254 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
MMP3P08254 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC19.19■□□□□ 0.66
MMP3P08254 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 FOXI1-201ENST00000306268 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 AHRR-204ENST00000506456 2350 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP3P08254 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP3P08254 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 UPK2-201ENST00000264031 916 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ROPN1L-201ENST00000274134 1066 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 FALEC-201ENST00000416894 566 ntTSL 3 BASIC19.19■□□□□ 0.66
MMP3P08254 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC19.19■□□□□ 0.66
MMP3P08254 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP3P08254 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.19■□□□□ 0.66
MMP3P08254 AC012617.1-203ENST00000590845 439 ntTSL 2 BASIC19.19■□□□□ 0.66
MMP3P08254 FSTL3-207ENST00000605925 748 ntTSL 4 BASIC19.19■□□□□ 0.66
MMP3P08254 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 REXO1L3P-201ENST00000622202 1288 ntBASIC19.19■□□□□ 0.66
MMP3P08254 AC105339.1-204ENST00000636249 355 ntBASIC19.19■□□□□ 0.66
MMP3P08254 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 AC129492.6-201ENST00000611383 1305 ntBASIC19.19■□□□□ 0.66
MMP3P08254 MYBPH-202ENST00000621380 1772 ntTSL 5 BASIC19.19■□□□□ 0.66
MMP3P08254 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
MMP3P08254 HIC1-202ENST00000399849 3156 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC19.18■□□□□ 0.66
MMP3P08254 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC19.18■□□□□ 0.66
MMP3P08254 TSEN15P1-201ENST00000423257 515 ntBASIC19.18■□□□□ 0.66
MMP3P08254 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
MMP3P08254 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
MMP3P08254 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
MMP3P08254 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC19.18■□□□□ 0.66
MMP3P08254 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC19.18■□□□□ 0.66
MMP3P08254 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 56.2 ms